<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04510

Description Uncharacterized protein
SequenceMANNPQYSGGPGPPLRPPMVGSVGPPQNIPPPMPTQFRSVASMHPSQQFAPPSTQQYHSIGPGIPGMNMGMPPSQNQQMQFAQPLQQVPARPIPPGHIPSMSQSVPLSNIQLNRPMSSGLPQPMQNLQPPNNFPSASGGSGMAPLPAYATNPYPTSQYQPVSQMNFQSNSISGQPLSASGNQDAATFTPLQQSGQPLPSITINSVVDSQPKPAEKSSSDWLEHTNNGRRFYYNKKTRQSTWEKPFELMTPIERADATTDWKEYMGPDGRKYFYNKVTKQSKWVIPEELKLAREHVEKASYAVEVTGSSSVSTSQAGVKTPSNVDTNSCLPAIHSSPARVTPVAVVGVAQSPTVSSPGLASLPLKDPEVQKDALSTVDVSETVPVTADEQAASSDPTPLPINESNVIPTEEAVESLQNVQANEAEEDNKSTDIIGKTSVTTLEDKLVEPETLTYASKQEAKDAFKALLESANVESDWTWEQAMRLIINDKRYAALRSLGERKQAFNEYLTQKRKHEAEERRVKHRKAREDFRKMLEECSELTSTTRWSKVLHLVGNDERFKAIERGRDREDMFEEYVVELEKKEYTKQEEERQLNIMEYRKFLESCDFIKANSQWRKVKDRLEGDLRCSQLDTMDQLKIFQEYVGDLEKEEEEQKRKQKEEIRKSERKNRDEFRKLMEGHVSDGTLSAKALWREYHSKVKDSLVYVAVSSNNSGSTPKELFEDVLEELKKQYEEDRIRIKDAVKSGKVALSSTWTLEDFKAAIEDEISSPAVSENNLKLVFDELLERVKEKEEKEAKRQKRLGDEFFNLLCSLKDITVDSSWEDCLPLFEARDEFRSIEEEAFSRQIFEEYLDQLKAKEEKDRKRKEEKAKREKERERDKRSRDKREKDRRRDRDRGKDRSGRDEGDAELDIDDVSVSSQGRKSGRDKDKKHRKRHQDDENDSGLDKNGKDHSRSSHRHSSERKKSREQHTESDSESKHKKPKREQRNGSRRKGDNEELEDGELGNW
Length1006
PositionUnknown
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.06
Grand average of hydropathy-1.092
Instability index61.41
Isoelectric point5.97
Molecular weight114650.16
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04510
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     151.55|      20|      20|      20|      39|       1
---------------------------------------------------------------------------
   20-   32 (19.28/ 6.50)	..........VGSV............GP..P.QNIP....PP
   33-   52 (34.40/17.45)	MPTQFRS...VASM............HP..S.QQFA....PP
   53-   72 (19.24/ 6.47)	STQQYHS......I............GPgiPgMNMG....MP
   73-   95 (23.56/ 9.60)	.PSQNQQ...MQFA............QP..L.QQVParpiPP
  114-  130 (33.63/16.89)	RPM...S...SGLP............QP..M.QNLQ....PP
  162-  196 (21.42/ 8.05)	SQMNFQSnsiSGQPlsasgnqdaatfTP..L.QQSG....QP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     454.64|      87|      88|     822|     908|       2
---------------------------------------------------------------------------
  501-  529 (31.08/ 9.47)	...........................................................KQAFNEY...LTQKRKHEAEERRV......KHRKAR.............................................ED
  549-  624 (94.02/42.36)	VLHLVGN..DERFKA..IERGRDR...................................EDMFEEY...VVELEKKEYT..KQ......EEERQLNIMEYRKFLESCDfiKANSQWRKVKDR.......LE..GD.......
  669-  757 (41.51/14.92)	.........RDEFRK..LMEGHVSdgtlsakalwreyhskvkdslvyvavssnnsgstpKELFEDV...LEELK.................................K..QYEEDRIRIKDAVK..SGKVA..LSSTwtlED
  758-  823 (58.18/23.63)	....FKAaiEDEISSpaVSENNL....................................KLVFDEL...LERVKEKEEKE.............AKRQK......RLGD..EFFNLLCSLKDIT............VDsswED
  824-  913 (142.04/67.45)	CLPLFEA..RDEFRS..IEEEAFS...................................RQIFEEY...LDQLKAKEEKDRKR......KEEKAKREKERERDKRSRD..KREKDRRRDRDRGKDRSGRDE..GDAEldiDD
  914- 1002 (87.82/39.12)	VSVSSQG..RKSGRD..KDKKHRK...................................RHQDDENdsgLD....KNGKDHSRsshrhsSERKKSREQHTESDSESKH..KKPK..REQRN.GSRRKGDNEelEDGE.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.28|      36|      39|     212|     247|       3
---------------------------------------------------------------------------
  212-  247 (71.84/49.41)	PAEK..SSSDWLEH.TNNGRRFYYNKKTRQSTWEKPFEL
  250-  288 (61.44/41.07)	PIERadATTDWKEYmGPDGRKYFYNKVTKQSKWVIPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     185.97|      36|      36|     380|     415|       4
---------------------------------------------------------------------------
  302-  335 (33.31/13.54)	..VEVTGS...SSVSTSQagvKTPSNVDTNSC....LP...AI...HSS
  343-  377 (28.93/10.93)	AVVGVAQS...PTVSSPG...LASLPLKDPEVqkdaLSTVD........
  380-  415 (56.82/27.58)	ETVPVTAD...EQAASSD...PTPLPINESNV....IPTEEAV...ESL
  417-  451 (35.04/14.58)	N...VQAN...EAEEDNK...STDI.IGKTSV....TTLEDKLvepETL
  468-  497 (31.87/12.68)	ESANVESDwtwEQA........MRLIINDKRY........AAL...RSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04510 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVEVTGSSSVSTSQAGVKTPSNVDTNSCLPAI
2) EEKDRKRKEEKAKREKERERDKRSRDKREKDRRRDRDRGKDRSGRDEGDAELDIDDVSVSSQGRKSGRDKDKKHRKRHQDDENDSGLDKNGKDHSRSSHRHSSERKKSREQHTESDSESKHKKPKREQRNGSRRKGDNEELEDGELGNW
3) MANNPQYSGGPGPPLRPPMVGSVGPPQNIPPPMPTQFRSVASMHPSQQFAPPSTQQYHSIGPGIPGMNMGMPPSQNQQMQFAQPLQQVPARPIPPGHIPSMSQSVPLSNIQLNRPMSSGLPQPMQNLQPPNNFPSASGGSGMAPLPAYATNPYPTSQYQPVSQMNFQSNSISGQPLSASGNQDAATFTPLQQSGQPLPSITINSVVDSQPKPAEKSSSDWLEHTNNGRR
4) SSPGLASLPLKDPEVQKDALSTVDVSETVPVTADEQAASSDPTPLPINESNVIPTEEAVESLQNVQANEAEEDNKSTDIIGKTSVTTL
301
858
1
354
332
1006
229
441










Molecular Recognition Features






MoRF SequenceStartStop




NANANA