<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04506

Description ATP-dependent DNA helicase
SequenceMDCTNEVLEQLLNVEAELQDVQDQIKILLDQQETLYARQSELKAILEDCEASSSHPNDGASIAPENWSGSFGWDSEADDLRLNIFGISSYRANQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAVLRDGICLVVSPLLSLIQDQVMGLTALGVPAYMLTSTTSKDDEKFIYKALEKNEGDLKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKTQFPTVPVIALTATATKKVQLDLMEMLRIQKCVKFVSSVNRPNLFYMVREKSSVGKVVVDEIAEFISGSYPNKESGIVYCFSRKECEQVAKELREKGIKADHYHADMEVRDRESVHMRWSSGKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPADMPRQSSMVFYENSGLQNLYDIVRYCQSRTGCRRAAFFKHFAEPLQDCNGMCDNCVSSSEVKDIDVSCHAKAMISLIQSIQENDQKVTMLQLVDKMKVKQKDLDSDLKRDHMEQLVIQLIIDRVLKEEFQHTAYTTNAYVALGLLGKQVLQGKKTVKLQICCDKDSNKAGVMKTAKRKSESSNLEFRLDELRKELASLHGGIFPHSILSTQQISVLAAEKPDSIEQLEKIIGKVKSGKYGSRIIEEISNRSESENLDPEIDEEHENKAAKKAKTKKTRVLIECSEDDE
Length708
PositionUnknown
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.06
Grand average of hydropathy-0.365
Instability index48.38
Isoelectric point6.16
Molecular weight79692.46
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04506
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     183.29|      59|     154|      18|      85|       1
---------------------------------------------------------------------------
   18-   85 (86.76/70.13)	LQDVQDQIKILLDQQETLyARQSELKAILEDCEasssHPNDGASIAPEN......WsgsfGWDSEADDLRLNIF
  175-  239 (96.54/55.57)	LEKNEGDLKILYVTPEKI.SKSKRFMSKLEKCH....HAGRLSLIAIDEahccsqW....GHDFRPDYKNLGIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.60|      12|     125|     319|     335|       2
---------------------------------------------------------------------------
  319-  330 (23.47/ 7.38)	YCFSRKECEQVA
  445-  456 (23.14/ 7.11)	YCQSRTGCRRAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.40|      13|      71|     598|     610|       6
---------------------------------------------------------------------------
  598-  610 (22.78/14.35)	KSESSNLEFRLDE
  670-  682 (23.62/15.13)	RSESENLDPEIDE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04506 with Med34 domain of Kingdom Viridiplantae
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