<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04502

Description Uncharacterized protein
SequenceMGTAQNYGPPMSTQYRPAVPGQQGQPYLPGSAQQFLAPGQNIPSGHNQPMQFSQPMQFSQPMQQLPPRPGMPGVPMSSQGMAMPYGQPNRPMTLGAQQNQHSAPPFGNHPSGVGGMGIPFSSSYTFQPVSHLSTPAASVGGQPWLSSGSQSAAPFVPVPQTADQSSGSAAPVPAVNPPDTSQQSSSDWQEHNTPDGRRYYYNKKTKQSSWEKPVELMTPTERADASTVWKEFTTPEGKKYYFNKVTKESKWTIPEDLKLAREQAAKAVSQGAQLDAGMKSHPTTTGGFTSEVAPSTNPVSGSSNGSSSVSGASSIPLSFPSGVNPAPVVNDASSELLMEHSAAPTSMAVTNALAMTPLSASISGDDALPAALNASSITVNASDKLPSQEISTSTDGGSAHDLEELRKGITAGKVSLSEKPTNDEPLVFANKQEAKGAFKSLLESANVHSDWNWDQAMRVIVNDKRYGALKTLGERKQAFNEYLGQRRKQEAEERRLRQKKAKEEFTKMLEESEVLASSMKWSKAVTMFEDDERFKAVEKPKDRQELFDNYLVELQKKEKEKADEEYRRNREDYWTFLESCDFIEANSLWRKVQDRLEDDERCSRLEKIDRLEIFQDYIRFLEKGEEEQKKLQKEQLRRAERKNRDEFRKVLEADVAAGVLTAKSIWRDYCAKVKESPAYLAVARNISGSTPKDLFEDAVDELENQYHEDKSRIKDVMKLSKMTMTSTWTFDEFKESVSPDLGSPPISDINFKLVFEDQLERIKEKEEKEAKKRQHLVDDFTDLLRSLKDITASSTWEDSRQLFEDSEEYREIGNETLAMETFKDCVVYLQEKAKEKERKREDEKVKKEKEREEKEKRKEKDRKEKDKDRDREKRKERSKKEESDDEAVDATDSHSNKDENRKEKEKDRDRKHKKRHHDNTIDDGSSDRDDDKERRHRKRHHDTTDDVSSDKDDKEDHKKSRRHGSDRKKSRKHEHSPDSDGESKHKRHKRDHRDGSRRTGAHDDLEDGELGEDGEIS
Length1017
PositionUnknown
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.06
Grand average of hydropathy-1.175
Instability index51.74
Isoelectric point5.97
Molecular weight115308.12
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04502
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.27|      21|      21|     907|     927|       1
---------------------------------------------------------------------------
  903-  926 (35.31/17.36)	EkekDRDRKHKKRHHDNTID.DGSS
  927-  949 (28.77/12.68)	DrddDKERRHRKRHHDTT.D.DVSS
  966-  983 (20.19/ 6.55)	......DRK.KSRKHEHSPDsDGES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     445.20|      63|      65|     431|     493|       2
---------------------------------------------------------------------------
  431-  493 (94.61/59.05)	KQEAKGAFKSLLE...S.AN.V...HSDWNWDQAMRV........IVNDKRYGALKTLGERKQAFNE............YLGQRRKQEAEE
  498-  561 (85.54/52.63)	QKKAKEEFTKMLE...E.SE.V..lASSMKWSKAVTM........FEDDERFKAVEKPKDRQELFDN............YLVELQKKEKEK
  570-  628 (81.12/49.51)	RED....YWTFLE...S.CDfI...EANSLWRKVQDR........LEDDERCSRLEKI.DRLEIFQD............YIRFLEKGEEEQ
  644-  709 (51.26/28.37)	RDE....FRKVLEadvA.AG.VltaKSIWR.DYCAKVkespaylaVARNISGSTPKDL......FED............AVDELENQYHED
  710-  769 (77.18/46.72)	KSRIKDVMK..LS...K.MT.M...TSTWTFDEFKES........VSPDLGSPPISDI.NFKLVFED............QLERIKEKEEKE
  773-  837 (55.50/31.37)	RQHLVDDFTDLLR...SlKD.I...TASSTWEDSRQL........FEDSEEYREIG.........NEtlametfkdcvvYL.QEKAKEKE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     110.25|      15|      16|     152|     166|       3
---------------------------------------------------------------------------
   37-   50 (19.95/ 7.90)	.APGQNI...PSGHNQPM
   70-   85 (21.82/ 9.33)	GMPGVPM..sSQGMAMPY
   86-  100 (25.01/11.77)	GQPNRPM...TLGAQQNQ
  152-  166 (25.35/12.03)	AAPFVPV...PQTADQSS
  169-  185 (18.12/ 6.49)	AAP.VPAvnpPDTSQQSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.66|      36|      38|     188|     225|       4
---------------------------------------------------------------------------
  188-  223 (71.62/34.75)	WQEHNTPDGRRYYYNKKTKQSSWEKPVELMTPTERA
  229-  264 (68.04/34.81)	WKEFTTPEGKKYYFNKVTKESKWTIPEDLKLAREQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.46|      15|      15|     846|     860|       5
---------------------------------------------------------------------------
  854-  870 (16.81/ 6.03)	KEKRKEKdRKEKDKDrD
  871-  886 (21.65/10.20)	REKRKERsKKEESDD.E
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     178.78|      32|      33|     358|     389|       6
---------------------------------------------------------------------------
  102-  135 (40.52/23.42)	SAPPFGNH...........PSGVGGMGIPFSSSytfqpvSHL..STP
  306-  341 (40.78/23.62)	SSSVSGASS.....IplsfPSGVNPAPVVNDAS......SELLMEHS
  342-  358 (22.01/ 9.24)	AAP......................TSMAV..T......NALAMTPL
  359-  390 (46.16/27.73)	SASISGDDA.....L....PAALNASSITVNAS......DKLPSQEI
  391-  424 (29.31/14.83)	STSTDGGSAhdleeL....RKGITAGK..VSLS......EKPTNDE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.63|      11|      17|       5|      15|       8
---------------------------------------------------------------------------
    5-   15 (22.97/12.81)	QNYGPPMSTQY
   25-   35 (21.66/11.67)	QPYLPGSAQQF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04502 with Med35 domain of Kingdom Viridiplantae
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