<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04501

Description Uncharacterized protein
SequenceMGYSEVVNNSLPPGAIPQQPVRPPVAQFVPGNAASQMMPPPVPIPQRESSAATNFTYSANYQSGSKQEVSTPTAATGVLKEASPTSSSGLSPVQASSSSETPVSAASNVSQVATPISGSPSFTLHSGFPAGSVIPGLPGQAGSTVLSSSPSVSSAVMGSFAPAVLRSPVVPLPSNPAFQPQVYPLYASMPSTGASPQPIWLQPPQMGGLRPPFLPYPPAFPGPFGLAARGVSLPSVPVPDAQPPGITPVNNLGGMRPSSVSSSVIQMAHSSMMQSEVPSPGTVNSKQTSDAGTNGNYVQNDHLDAWSAHRTETGALYYYNAITGESTYEKPSAFKGEPAKAITQPTPVAWEKVNGTDWALVSTNDGKKYYYNTKNETSSWQVPPEVTELRKKQENDNAKENSMSVPNSNELHEKGSGPTSISAPALNTGGRDAIALRASGAPGSSSALDLIKKKLHESGAQVTSFSTISSGSALLEVNGSKTVDPTAKGLQSEGSKDKPRDGEGDGNISDLSSDSEDEDSGPTKEERIAQFKDMLKERGVAPFSKWDKELPKIVFDPRFKEIPTYAERRSLFEHYVRTRAEAERKEKRAAQKAAVEGFKQLLEEAKEDIDHTTTYHTFRKRWGHDQRFEALERKDREVFLNERVLSLKRVAEEKIRAERTVVVSNFKSMLRERGDVTASSRWSRVKDGLRDDSRYKAVKHEEREALFNAYISELKAADDEVEREAKAKREEQEKLKERERELRKRKEREEQQMERVRSKVRRKEAVASYLALLVETIKSHQASWTESKPKLVKDPQGRASNPDLDESDLERLFREHVKMLYERCACDFRALLVEKITPEAATRETEDGKTVLNSWSTAKKFLKSDPRYTKMPRKDREALWKRHAEELQRKQKGAVEQKGDQYNESKNRNANDSGRPLSVSRSGQDWR
Length927
PositionUnknown
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.06
Grand average of hydropathy-0.784
Instability index51.18
Isoelectric point8.93
Molecular weight101954.62
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04501
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     431.72|      63|      65|     586|     648|       1
---------------------------------------------------------------------------
  525-  561 (46.96/28.35)	........................EE.RIA..Q......FKDML.............KE..RGVAPFSKWDKELPKIVF.......DPRFKE
  562-  630 (88.18/60.89)	IPTYAERRSLFEHYVRTRaeaerkEK.RAA..QKAAVEGFKQLL.............EEAKEDIDHTTTYHTFRKRWGH.......DQRFEA
  631-  697 (62.50/40.61)	LERKDREVFLNERVLSLK..rvaeEKiRAE..RTVVVSNFKSML.............RE.RGDVTASS.......RWSRvkdglrdDSRYKA
  698-  745 (39.82/22.71)	VKHEEREALFNAYISELK.aaddeVE.REA...KAKREEQEKLK.............ERERE..........LRKR................
  746-  799 (63.79/41.63)	...KEREEQQMERVRS...........KVR..RKEAVASYLALL.............VETIK..SHQASWTESKPKLVK.......DPQGRA
  804-  870 (61.36/39.72)	LDESDLERLFREHVKML..............yERCACD.FRALLvekitpeaatretEDGKTVLNSWSTAKKFLK...S.......DPRYTK
  871-  927 (69.12/45.84)	MPRKDREALWKRHAEELQ............rkQKGAVEQKGDQY.............NESKNRNANDSGRPLSVSRSGQ.......DWR...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     355.46|      64|      65|     138|     201|       2
---------------------------------------------------------------------------
   10-   50 (45.97/18.34)	............SLPP....GAIPqQPV....RPpvaqfvPGNAASQ............MMPP........P...........VPIPQRESS
   51-  122 (80.25/37.82)	AATNFTYSA...NYQS.....GSK.QEV.....S......TPTAATGVLkEASPTSSSGLSPVQASSSSETPVsaasnvsqvaTPISGSPSF
  123-  178 (89.50/43.07)	.....TLHS...GFPA...GSVIP.G.......L......PGQAGSTVL.SSSPSVSSAVMGSFAPAVLRSPV..........VPLPSNPAF
  179-  220 (81.47/38.51)	QPQVYPLYA...SMPS...TGASP.QPI....WL......QPPQ................MGG.....LRPPF..........LPYP..PAF
  221-  280 (58.26/25.32)	.PGPFGLAArgvSLPSvpvPDAQP.PGItpvnNL......GGMRPS........SVSSSVIQMAHSSMMQSE...........VPSP.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      95.08|      19|      20|     388|     406|       3
---------------------------------------------------------------------------
  388-  406 (29.15/15.63)	ELRKKQEN......DNAKENSMSVP
  410-  424 (24.97/12.31)	ELHEK..........GSGPTSISAP
  425-  449 (20.45/ 8.71)	ALNTGGRDaialraSGAPGSSSALD
  450-  466 (20.51/ 8.76)	LIKKKLHE......SGAQVTSFS..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.27|      41|      49|     291|     331|       4
---------------------------------------------------------------------------
  291-  331 (74.82/52.21)	AGTNGNYVQNDHLDA..WSAHRTETGALYYYNAITGESTYEKP
  341-  383 (71.45/49.51)	AITQPTPVAWEKVNGtdWALVSTNDGKKYYYNTKNETSSWQVP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04501 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALLEVNGSKTVDPTAKGLQSEGSKDKPRDGEGDGNISDLSSDSEDEDSGPTKEERIAQFK
2) MGYSEVVNNSLPPGAIPQQPVRPPVAQFVPGNAASQMMPPPVPIPQRESSAATNFTYSANYQSGSKQEVSTPTAATGVLKEASPTSSSGLSPVQASSSSETPVSAASNVSQV
3) PRKDREALWKRHAEELQRKQKGAVEQKGDQYNESKNRNANDSGRPLSVSRSGQDW
4) SVIQMAHSSMMQSEVPSPGTVNSKQTSDAGTNGNYVQNDHLDA
5) SWQVPPEVTELRKKQENDNAKENSMSVPNSNELHEKGSGPTSISAPALNTGGRDAIALRASGAPG
6) VEREAKAKREEQEKLKERERELRKRKEREEQQMERVRS
473
1
872
263
379
721
532
112
926
305
443
758










Molecular Recognition Features






MoRF SequenceStartStop




1) LDLIKKKLH
448
456