<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04499

Description Uncharacterized protein
SequenceMEAMMGTQQGQTQAPPQQPPQPEKVVEKLNSAVQQQLNLDSVKTRAISLFKAISRILEDFDVLSRSNALPKWQDVVGQFSMVNLELFNIVEDIKKVSKAFVVHPRNVNAENATILPVMLSSKLLPEMEVDDNSKRDQLLLGMQNLPIPTQIDKLKARIDMIAAACESAEKVIGETRKAYGLDTRQRMSTVPTLDKAFSAKIQEKENLLRAAVNHGEGLRLPVDQRHVTSPLPSHLADVLTVGDGGQTYGDGSGMYSKNTPVISGNHNNQGLPLQMQASGGQLLGRSVPSPSTATVASTAENTASPMQYANSPRSGTNMINAPSSQQQTLQQQHQLQQQRKMMQLPTQQQQQQLLAQQQFRQSAMQGLAQLQGQSQMQFSQPLASQQFQSRQLPTGHIGQSQLSQGNQLNRHIGQFSGAANTALFNASQNSPNASVMSMPATMTSQSMLPRMQQFALPGGNPQRTHPSQMLSDQMFNMGANQASMMSLPQQQQVPQGAFGSMSQNSQNLQSNMVPLQNATQNLQNFQQQQRQQNQQ
Length535
PositionHead
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.04
Grand average of hydropathy-0.606
Instability index60.55
Isoelectric point9.47
Molecular weight58753.70
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04499
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     139.40|      35|      37|     334|     370|       1
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  334-  368 (65.04/19.41)	QLQQ.............QRKMMQLPTQQQQQQLLAQQQF..RQ..SAMQGLA
  369-  400 (39.74/11.84)	QLQG.............Q.......SQMQFSQPLASQQFqsRQlpTGHIGQS
  492-  535 (34.63/ 7.79)	QVPQgafgsmsqnsqnlQSNMVPLQNATQNLQNFQQQQ...RQ..QNQQ...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.20|      27|      37|     215|     246|       2
---------------------------------------------------------------------------
  215-  236 (33.66/13.20)	.........GEGL...RLPV.DQRHVTSPLPSHLA
  242-  276 (34.24/19.98)	GDGGQtygdGSGMyskNTPViSGNHNNQGLPLQMQ
  277-  296 (32.30/ 9.84)	ASGGQ....LLG...........RSVPSPSTATVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.25|      47|     334|      63|     128|       4
---------------------------------------------------------------------------
   63-  128 (68.73/76.95)	LSRSNALPKWqdvVGQFS.MVNLELFNIVEdikkvskafvvhprnvNAENATI..LP.VMLSSKLLPEME
  402-  452 (73.52/44.95)	LSQGNQLNRH...IGQFSgAANTALFNASQ................NSPNASVmsMPaTMTSQSMLPRMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.05|      14|     470|       5|      18|       8
---------------------------------------------------------------------------
    5-   18 (27.60/13.14)	MGTQQGQTQAPPQQ
  477-  490 (26.45/12.25)	MGANQASMMSLPQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04499 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QTYGDGSGMYSKNTPVISGNHNNQGLPLQMQASGGQLLGRSVPSPSTATVASTAENTASPMQYANSPRSGTNMINAPSSQQQTLQQQHQLQQQRKMMQLPTQQQQQQLLAQQQFRQSAMQGLAQLQGQSQMQFSQPLASQQFQSRQLPTGHIGQSQLSQGNQLNRHIGQFSGAANTALFNASQNSPNASVMSMPATMTSQSMLPRMQQFALPGGNPQRTHPSQMLSDQMFNMGANQASMMSLPQQQQVPQGAFGSMSQNSQNLQSNMVPLQNATQNLQNFQQQQRQQNQQ
246
535










Molecular Recognition Features






MoRF SequenceStartStop




NANANA