<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04497

Description Uncharacterized protein
SequenceMSGMSVFAGQECNKKAPKVNWDEHVKSHNNFATQNEFLSSSFLFSLPTQKPRPEGRMMTCQVQSIGRSQVEQAWKSLSSLQLGRRNYVRPGKTVQPVKNVNAVQFPGKHGVPEKSYGNNMKNSVNQEWHHKVTESKDKAGNPTRYYSASTPMHQTVEAGMGEAKLLHSSHLPIREGSLHHNVKSTSDSKGPDEAVIDVINDDDILGNIDVDQIVMEHYQSSCTPQPAGSKSLQATPMADKYVIARHDETSLPPELCCNCSHGYKLGLCPEGTIHLQEMKDMLIVISNELLDNLDLTPERMEKLRQDRLQLNKQIQLMETHVRNMTIDVEMQNSQFSATTENVRGYNHDTSQATFRSNAYDTPQATFRSNAYDTPQATFPSNGYDAPQASGFMTDPMRLDNRFNNFDESSGYNRSDLSSVSFSSMERFDFSSAPVDRESYKPRVVDVNYIEGSNDRKWSSWDFPWTKNLETNNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALVCPGVTLVVSPLVSLIQDQIMHLLQANIPAAYLSANMEWSEQQEILRELCSDNCRYKLLYVTPEKIAKSDVFLRNLEKLYSLDLLARIVIDEAHCVSQWGHDFRPDYQSLGILKQKFPATPVLALTATATAVVKEDVVQALGLANCIVFRQSFNRPNLSYSVMPKTKKCLEEFDKFIRANYFDECGIIYCLSRMDCEKVAEQLQGYGHKAAFYHGTMDAAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSIPKSVEGYHQECGRAGRDGLRSSCVLFYSYSDYIRVKHMLSQGAIEQNAFASTHNRLNSSNPGRIMETNMENLQRMVSYCENEVDCRRLLQLAHFGENFDPAHCKKTCDNCSKVKSSIEKDVTQVAIQLVELVKSTGQQFSSAHILEVFRGSLSQYVKKHKHNTQKLHGAGKGLAKGEASRVLRHLVVENILVEEVKKSDIYGSVSSVLKVNECKCRNLFFGGQKIILRFPSIAQSTLKFTKADATPAKSSPIFGKTSPLQSHNSKPESEADLDISAKLFPALRLLRTALMKEGGDRVMAHHIFSNTTLQLISRKVPRTKEELLEVNGIGNVKLKKYGDRLLETIEATIKQHNNINKNSSSSNDSADSIKRRREAAKVSSNGTSNGDEDMMGSTGRSKKRVVAAGKTSEIKPMEVDVFSDCLDADLDYDDQVFEMQANNGLINPMGETNVNGRKLPVWPGQRKI
Length1240
PositionUnknown
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.07
Grand average of hydropathy-0.516
Instability index44.71
Isoelectric point8.33
Molecular weight139090.03
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04497
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.81|      56|     487|      87|     151|       2
---------------------------------------------------------------------------
   87-  151 (83.29/73.92)	YVRPGKTVQP...VKNVN...AVQFPGKHGVPEksygnnmKNSVNQeWHHKVTESKDKAGNPTRYYSAsTP
  577-  638 (82.52/50.11)	YVTPEKIAKSdvfLRNLEklySLDLLARIVIDE.......AHCVSQ.WGHDFRPDYQSLGILKQKFPA.TP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.24|      17|      22|     343|     359|       3
---------------------------------------------------------------------------
  343-  359 (34.29/20.21)	RGYNHDTSQATFRSNAY
  367-  383 (34.95/20.74)	RSNAYDTPQATFPSNGY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.19|      18|      49|     973|     991|       5
---------------------------------------------------------------------------
  973-  991 (26.73/22.24)	KKSDIYGSVSSvLKVNECK
 1025- 1042 (32.47/22.08)	KSSPIFGKTSP.LQSHNSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.52|      29|     309|     232|     264|       6
---------------------------------------------------------------------------
  232-  264 (48.40/38.53)	LQAT.PMAdkYVIAR...HDETSLPPELCC.NCShgYK
  541-  574 (40.11/20.61)	LQANiPAA..YLSANmewSEQQEILRELCSdNCR..YK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.59|      15|      17|     467|     481|       8
---------------------------------------------------------------------------
  449-  462 (20.39/11.43)	.IEGSNDRKWSSWDF
  467-  481 (24.25/15.09)	NLETNNKKVFGNHSF
  485-  499 (23.95/14.80)	QREIINATMSGHDVF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.17|      33|     184|     688|     720|       9
---------------------------------------------------------------------------
  688-  720 (60.27/37.37)	EEFDKFIRANYFDECGIIYCLSRMDCEKVAEQL
  873-  905 (56.90/34.89)	ENFDPAHCKKTCDNCSKVKSSIEKDVTQVAIQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.57|      16|      27|     265|     282|      13
---------------------------------------------------------------------------
  265-  282 (25.37/22.72)	LGLCPEGTIHLQemKDML
  293-  308 (28.20/17.57)	LDLTPERMEKLR..QDRL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04497 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MQANNGLINPMGETNVNGRKLPVWPGQRKI
2) QATFRSNAYDTPQATFPSNGYDAPQASGFMTDPMR
3) RNYVRPGKTVQPVKNVNAVQFPGKHGVPEKSYGNNMKNSVNQEWHHKVTESKDKAGNPTRYYSASTPMHQ
4) TIKQHNNINKNSSSSNDSADSIKRRREAAKVSSNGTSNGDEDMMGSTGRSKKRVVAAGK
5) VEAGMGEAKLLHSSHLPIREGSLHHNVKSTSDSKGPDEAVI
1211
363
85
1124
156
1240
397
154
1182
196










Molecular Recognition Features






MoRF SequenceStartStop




NANANA