<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04496

Description Uncharacterized protein
SequenceMELLMPFPFPDPTVDRCSRFSSSSSSFSMASYGAELERQASRAELNSRLTDIEEEEEEEEGGGKGGEKREKVYVAVGKSEEKTVSLLQWTFHNFRCCDICLVHVHHPSSFIPTPLGKLPATQANAVVVDAYRKEEREKVKKLLRAYLDFCYRAKVKASSIITEDDQIQKGLLNLVMKYGMQKLVMGSVPENCVKVKKNSRKASYAAKSAPAFCEIWFIHKGKHVWTREAFEKVIVSTTYQADEPRTDRLRSKSFQYKENDRLYNPVNLRSRSSHLSVRGSGVKDWKTTELTDEDLLLPCSGNPRHPGYARSSISNDSASSTSTEIRVSSDSGLNLEEENLYGQLLEAKARVETSRNEACLEFLKRKELEAEAMKTMRKVKEFESLQTHEAGLREEAEVALNILMDEQERLFEERLKVTEELQKTMRSVAVLDSRVQEANRRGNEAAEELKLIQVCVTSLWQEKKNIERQKMEAERWLENWRSRRRTGGSNLRGYRGLMDDVPELVEFSLSDLQSATCNFSDSFKLVEGGYGSIYKGELLSKTVAIQRFHAHNIQGPSQFQKQVQVLGKLRHPHLVTLIGVSPEAWSLVYDYVPNGCLQWRLFQKNNIAPLSWKIRARIISQISTSLLFLHTSHPEKIIHGDLKLESILLDSDLHCKIGDFGFSKLLSEDTPSFPSFHRYPEPQGAFPYRDPEFYRTGKLSTKSDIYSFGVIILQLLTGQPPVGLIANVRRAISGGKLDSILDSSAGNWGPFVAEKLADVALRFCEQNCRVRPDLTPSLVKELQQLHISKERPVPSFFLCPILQEIMCDPQVAADGFTYEGEAIREWLLNNRETSPMTNLRLDHLHLTPNNSLRLAAQEWLCKY
Length863
PositionTail
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.08
Grand average of hydropathy-0.479
Instability index49.32
Isoelectric point7.28
Molecular weight98189.65
Publications
PubMed=24352233

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04496
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.60|      36|     448|      73|     118|       1
---------------------------------------------------------------------------
   73-  118 (59.28/60.65)	YVAVGKSE..EKTVSLLQWTFHNfrccdiclvhVHHPSSFIP..TPLGKL
  530-  569 (56.32/35.22)	YGSIYKGEllSKTVAIQRFHAHN..........IQGPSQFQKqvQVLGKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     194.29|      48|      48|     367|     414|       2
---------------------------------------------------------------------------
  367-  414 (74.79/52.36)	ELEAEAMKTMRKVKEFES.LQTHEAGLR.EEAEVALNILMDEQERLFEER
  416-  463 (62.25/42.25)	KVTEELQKTMRSVAVLDS..RVQEANRRgNEAAEELKLIQVCVTSLWQEK
  465-  506 (57.26/38.23)	NIERQKMEAERWLENWRSrRRTGGSNLR......GYRGLMDDVPELVE..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.60|      16|     112|     586|     618|       7
---------------------------------------------------------------------------
  183-  198 (29.24/ 8.77)	LVMGSVPENCVK...VKKN
  587-  605 (26.36/41.02)	LVYDYVPNGCLQwrlFQKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.36|      23|     677|       7|      29|       9
---------------------------------------------------------------------------
    7-   29 (44.52/30.53)	FPFPDPTVDRCSRFSSSSSSFSM
  686-  708 (43.84/29.95)	FPYRDPEFYRTGKLSTKSDIYSF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04496 with Med32 domain of Kingdom Viridiplantae
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