<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04493

Description Uncharacterized protein
SequenceMDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFNTNNNNDGFATNAVVEAVFGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQPDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKALKETDIGRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNLIVDGDSPLQTVSRNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRDPPAKPMKSASPASAPPPNRQKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKPRNSFFGRNKGGFQRH
Length367
PositionUnknown
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.05
Grand average of hydropathy-1.004
Instability index52.44
Isoelectric point5.13
Molecular weight41417.15
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04493
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.40|      13|      15|     269|     281|       1
---------------------------------------------------------------------------
  269-  281 (22.08/10.18)	KNNSEFEP.KRKGP
  286-  299 (17.32/ 6.61)	RRDPPAKPmKSASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     172.96|      50|      91|     217|     266|       3
---------------------------------------------------------------------------
  217-  266 (91.26/53.22)	NVPGEVQSSNNLIVDGDSPLQTVSRNHQNGNHN...QVPDFAYSPNPHNGSYG
  306-  358 (81.70/46.93)	NRQKEVQIDPDRLASARKRLQENYQEAQNAKKQrtiQVMDIHEIPKPRNSFFG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04493 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EVQSSNNLIVDGDSPLQTVSRNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRDPPAKPMKSASPASAPPPNRQKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKPRNSFFGRNKGGFQRH
2) RGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQPDRRFVENADEE
221
82
367
132










Molecular Recognition Features






MoRF SequenceStartStop




1) FFGRNKGGF
2) KRLQENYQ
356
323
364
330