<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04490

Description Uncharacterized protein
SequenceMETLKRHLPFSGQEGLQELKQIAIRFEEKIYSAATSQSDYLRKISLKMLTMESKSQNSLPNALPSNSSGMSRNPQDSVPSQNMQSQVQSQSQSVPHQMASQSQSRQQVLAQNMQNNIASAGMQTTASLPNSLPQVNSLAQNMPNASQNTNMQSISGISQNSMGSTMNPGVSSNMFTNAQRQMQGRQHTQQAGSHQQQQSQNSQQYMYQQQLQHQMLKQKLQGNIQQPVMQTPLQQQQPQSQAQQNLLQATQQPIMQTSSVMQPSMMSGLQPNQQSSIQQPSQSVLQQHQQSVLRQQQQPQSQPQSQPQPQPQPQQTSINQQQQTQLPQQSMMTSQGQQQQLMGQQPNSANVQQNQLVGQQSNISDMQQQQQQQQQQPQQQQRMSGQQNNLQNLPSQQQTSHQNMQQQHMMGQQSNLSNMHQQQLGHQSHAGGLSQQQLMGTQSGNANMQTNQHSVHMMQQQKGVVPQQNQNASLLPGGGQPAQSQSQSQQQLMSQLQSQPALQQQLGLQQQTNSLQHNMQPRMQNPSSLLQQQNMIDQQKQMFQSQRALPEAPSSSLDSTAQTGNTNAGDWQEEVYQKIKTMKDMYFADLNEMYQKITMKLQQHDTLPQQPKMDQLEKLRIFKNMLERLMQVLQITKNNIQPNHKEKLPSFEKQIVGLLNTNRPRRPVPSMQSGQILPPQMQSMQQAQQPHSQITQAQSHEVGVNPQLQSMNLQGSVTTMQQSNVPSLQHGSVPSISAITSSQQSMGGPLQTNPNLDSGQGSTPSSVQQVAMASLQQNPVGAPQQGNMNSLQSQNGVNMLQPNIQSSSNMLQNQHLKQQQEQQIMQNQQLNLKQQLQNRHMQQQMMQKQQLLQQQQHLHQQVKQQQASQISAHQMPQLHQNDVNEKMRQGLGLRSGVFPQHLSSAQRFAHQQLKPVASFPVSSPQLFQAVSPQINQHSPQIDQQNLXRSPVNHTLLEEIREINERLIDTVIDVSDEDTDPFVAEGSEGTIVKCSFNAVSLSPKLKSHYTSAQMSPIQPLRLLVPVNYPNCSPILLDKLSVDVSNEYEDLSAKAKSRFSISLRSLSQPMSLKEIARTWDNCARAVICEYAQQQGGGTFSSKYGTWEKCLTAA
Length1111
PositionTail
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.03
Grand average of hydropathy-0.949
Instability index84.22
Isoelectric point9.38
Molecular weight124531.76
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04490
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.60|      25|      26|     385|     410|       3
---------------------------------------------------------------------------
  385-  410 (46.28/16.26)	GQQNNLQNLpSQQQTSHQN....MQQQHMM
  411-  439 (34.32/ 6.03)	GQQSNLSNM.HQQQLGHQShaggLSQQQLM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     460.75|      68|      68|     235|     302|       5
---------------------------------------------------------------------------
   37-  101 (57.16/ 6.17)	Q...............................SDylrkislkmltMES...KSQ......NSLPNA..............L.PSNSS.........GMSRNPQDSV..PSqnmQSQVQ..SQ.SQSV......PHQMA.SQ
  134-  203 (71.42/10.04)	.................................Q...........VNS...LA.......QNMPNASQ.NTNMQSiS.GISQNSMGS.........TMNPGVSSNMFTNA...QRQMQgrQHtQQAG...SHQQQQSQnSQ
  204-  302 (115.46/22.00)	QymyqqqlqhqmlkqklqgniqqpvmqtplqqQQ...........PQS...QAQ......QNLLQATQ.QPIMQT.S.SVMQPSMMS.........GLQPNQQSSIQQPS...QSVLQ..QH.QQSV...LRQQQQPQ.SQ
  306-  372 (82.13/12.95)	Q...............................PQ...........PQP...QPQ......QTSINQQQ.Q......T.QLPQQSMMTsqgqqqqlmGQQPNS.ANVQQ.N...QLVGQ..QS.NISD...MQQQQQ....Q
  487-  546 (77.49/11.69)	...................................................QSQ......QQLMSQLQsQPALQQ.Q.LGLQQQTNS..........LQHNMQPRMQNPS....SLLQ..Q..QNMI...DQQKQMFQ.SQ
  687-  759 (57.08/ 6.14)	A...............................QQ...........PHSqitQAQshevgvNPQLQSMN....LQG.SvTTMQQSNVP.........SLQHGSVPSI........SAIT..SS.QQSMggpLQTNPNLD.SG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.95|      33|     200|     442|     486|      11
---------------------------------------------------------------------------
  442-  475 (53.41/12.23)	QSGNANMQTNqHSVHMMQQQKGVVPQQNQNASLL
  634-  666 (50.54/12.51)	QITKNNIQPN.HKEKLPSFEKQIVGLLNTNRPRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.82|      20|      48|     859|     878|      15
---------------------------------------------------------------------------
  853-  872 (33.50/11.67)	QQQQHLHQQ...VKQQQASQISA
  873-  895 (29.33/ 9.09)	HQMPQLHQNdvnEKMRQGLGLRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.20|      18|      46|     991|    1008|      19
---------------------------------------------------------------------------
  991- 1008 (32.21/24.31)	VKCSFNAVSLSPKLKSHY
 1040- 1057 (29.99/22.13)	VDVSNEYEDLSAKAKSRF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04490 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LQITKNNIQPNHKEKLPSFEKQIVGLLNTNRPRRPVPSMQSGQILPPQMQSMQQAQQPHSQITQAQSHEVGVNPQLQSMNLQGSVTTMQQSNVPSLQHGSVPSISAITSSQQSMGGPLQTNPNLDSGQGSTPSSVQQVAMASLQQNPVGAPQQGNMNSLQSQNGVNMLQPNIQSSSNMLQNQHLKQQQEQQIMQNQQLNLKQQLQNRHMQQQMMQKQQLLQQQQHLHQQVKQQQASQISAHQMPQLHQNDVNEKMRQGLGLRSG
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
633
49
896
575










Molecular Recognition Features






MoRF SequenceStartStop




NANANA