<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04489

Description Uncharacterized protein
SequenceMAETQPASGAAFWETVLELTKSAQEKNIDPLAWAIQLGATLNSAGLTLPSVELSHLLVSHICWNNNNPTTWKFLEKALVLKFVPPMLVLALLSTRVIPSRSLHPAAYRLYMELLKRYGSSFAFQLHASNHEKILKAVDDALHLSDLFGIQPFDPAVLSVLFVFSNVWQLVDASLDDEALLEYSTDKSSRWLTEIQTMDIDDSGHFPENRTEFQEGMFKTNTLMAIEMIVEYLQSRVTSQILFLVRQNMPSHWRDFYQHLQLLASKSLALRSSKITTPEIFAQMASDTRKHLHWQCKTNLQHQFHAVMAPGCFLPSSVQCHGASNSSLWLPIDLFLEDAMEGIIVTPTCVIDTLTGMVKSLQALYSTTWHDTFLGLWIAILRLVQREKNPCEGPVARLDTCLCMLLSITPLVLVNLVDEQNMESEFSQMEDKQASKSRLHELISSLQQLGEYEGLLTPPSSVASIANQAAIKAIMYLSGLNITSGYLDSFSVSDVPINCAGNMRHLIVEACIARNLLDISAYAWPGYVNARVNQIPRLSGQVTGWSSLMKGSPLTSALMNALVSSPASSLAEVEKIYEIAVGGSDEEKISAASVLCGSSLIRGWNVQEHTVLFLLRLLSPPMPAGYSESESHLISYGPFLNVLLVGIATVDIVQIFSLHGLVPHLAGELMPICEVFGSCSPKVSWTLTTGEEINSHAVFSNAFTLLLKLWSFDHTPIEQAMGDVRSVASQLSPEYLLLVRNSQLASFGNASTDQSKGRRFSKLITLPSTEPIFMDSFPKLKCWYRQHQACIASPLSGLTPGTPVHQIVEALLTMLFKKMNRGTTSGSTSSSGSSMEEAVLRLQLPAWDILEALPFVLDAALTACAHDKLSPRDLATGLKDLADFLPASLASILSYFTAEVTRGVWKPVSMNGTDWPSPAANLSMVEQQIRKVLATTGIDVPSLATVGSSIPTLPLPLAALLSLTITYKIDKANERYLNLVGRGVVVLAACCPWPCMPIVAALWAQKAKRWSDFLIHSASRTVFNLNNDAVVQLLRSCFSSVLGFNASPRCRNGGVGALLGNGFGSRYSNGMSPVAPGIFYLRVCPFIRNITFVTEEILSLLMVSVKGIAVGGLSNDAIEKLKKSKFGMRYRQVSLTSAMSRVKLAASVGASFVWISGGLNLLQTLLKETLPSWFISTQRTDHISESGGVVATLSGYALAYFAVLCGLFAWGIDVESSASKWRSKVLASHLEFMATALEGKISLGCDMATWRAYVSGFLGLLVRCIPAWLHDIDVHILKSLSRGLRQWNEEELAVALVGVSGINAMGVAAELIIQSA
Length1315
PositionTail
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.08
Grand average of hydropathy0.224
Instability index42.84
Isoelectric point6.30
Molecular weight143804.81
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04489
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     272.57|      89|     527|      71|     169|       1
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   71-  169 (132.99/111.44)	WKFLEKA..LVLKFV.PPMlvLALLStrviPSRSlHPAAYRLYME.LLKRYGSSFAFQLHaSNHEKILKAVDDALHLSDLFGiqPFDPAVLSVLF.........VFSNVWQL
  603-  704 (139.58/88.25)	WNVQEHTvlFLLRLLsPPM..PAGYS....ESES.HLISYGPFLNvLLVGIATVDIVQIF.SLHGLVPHLAGELMPICEVFG..SCSPKVSWTLTtgeeinshaVFSNAFTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     297.94|      81|     527|     506|     588|       2
---------------------------------------------------------------------------
  506-  588 (128.35/88.09)	IVEACIARNLLDISAYAWPG.....YVNARVNQ.I.PR.LSGQVTGWSSLMKGSPLTSALMNalVSSPASSLAE.VEK.IYEI.AVGGSDEEKI
  787-  868 (97.08/60.31)	..QACIASPLSGLT....PGtpvhqIVEALLTM.LfKK.MNRGTTSGSTSSSGSSMEEAVLR..LQLPAWDILEaLPF.VLDA.ALTACAHDKL
  874-  938 (72.50/42.83)	ATGLKDLADFLPASLASILS.....YFTAEVTRgV.WKpVSMNGTDW..................PSPAANLSM.VEQqIRKVlATTGID....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.06|      43|     722|     279|     323|       3
---------------------------------------------------------------------------
  279-  323 (78.81/54.34)	IFAQMASDTRKHL.HWQCKT..NLQHQFHAVMAPGCFlpSSVQCHGAS
 1001- 1046 (67.25/39.93)	LWAQKAKRWSDFLiHSASRTvfNLNNDAVVQLLRSCF..SSVLGFNAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.26|      52|      57|    1153|    1209|       4
---------------------------------------------------------------------------
 1154- 1209 (76.16/48.45)	I...SGGLNLLQTLLKETLPswFISTQRTDHISeSGGVVATLSGYALAYFAVL..CgLFAW
 1211- 1267 (84.10/36.25)	IdveSSASKWRSKVLASHLE..FMATALEGKIS.LGCDMATWRAYVSGFLGLLvrC.IPAW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04489 with Med33 domain of Kingdom Viridiplantae
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