<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04481

Description Uncharacterized protein
SequenceMDHHQYGGGSWSMIPNIPTHTNLSTPSTQDPLFLSSQPQNQQQFNLQQQQTQQQQFGLHHQQQQQQFQSPQHQQFIQQSPQQQQQFVHPSPQQQLQQQQQFVHPSPQQQSQQQQQPQQQQQYVHPSPQQQQQQFVQPSPQQQQQQFVHPSPQQQQQFVPPSPQQQPQFVPPSPQQQQQQFVQQSPQQQQQQPSQIQTQRFQQQQQYVQQSPQQQQQQFQQPSQFQQQTQQLQQPQQQFVHQSPQQSQQQQLQSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIENGNRDQHANTSIGELNSRFEKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDLISNYKSSVEELIKSEP
Length368
PositionMiddle
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.06
Grand average of hydropathy-1.491
Instability index121.42
Isoelectric point6.55
Molecular weight43066.15
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04481
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     306.48|      31|      31|     191|     221|       1
---------------------------------------------------------------------------
   45-   70 (50.02/ 6.10)	...NLQQQQTQQQQFGLHH..QQ.QQQQFQSP
   88-  116 (66.10/11.99)	HPS..PQQQLQQQQQFVHPSPQQ.QSQQQQQP
  124-  149 (64.38/11.36)	HPS...PQ..QQQQQFVQPSPQQ.QQQQFVHP
  191-  221 (70.86/13.74)	QPSQIQTQRFQQQQQYVQQSPQQ.QQQQFQQP
  227-  254 (55.12/ 7.97)	QTQQLQ....QPQQQFVHQSPQQsQQQQLQSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.74|      16|      81|     173|     189|       4
---------------------------------------------------------------------------
  151-  166 (36.84/ 6.91)	P.QQQQQFVPPSPQQQP
  173-  189 (31.91/ 7.68)	PqQQQQQFVQQSPQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.69|      19|      33|     274|     292|       5
---------------------------------------------------------------------------
  274-  292 (30.88/22.12)	LASHFHL.LNLVENLADAIE
  307-  326 (26.80/18.21)	LNSRFEKcQQLLNSIAGTIN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04481 with Med9 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDHHQYGGGSWSMIPNIPTHTNLSTPSTQDPLFLSSQPQNQQQFNLQQQQTQQQQFGLHHQQQQQQFQSPQHQQFIQQSPQQQQQFVHPSPQQQLQQQQQFVHPSPQQQSQQQQQPQQQQQYVHPSPQQQQQQFVQPSPQQQQQQFVHPSPQQQQQFVPPSPQQQPQFVPPSPQQQQQQFVQQSPQQQQQQPSQI
2) QQLQQPQQQFVHQSPQQSQQQQLQSPPQQSQSQSQSQSQPQQHQSLASHFH
1
229
195
279










Molecular Recognition Features






MoRF SequenceStartStop




NANANA