<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04480

Description Uncharacterized protein
SequenceMTSSSSTNNNNNPEPDSPPPPNPPASETVAVETDNLEAEEEAFMEKSMVSDDHMDEDSVNNHPATVFCITLNQSRSNLLHKMSVPDLCRNFSAVAWCGKLNAVACASETCARIPSSNANPPFWIPIHIVIPERPTESSIFNVIADSPRDSVQFIEWSPPSCPRALLIANFYGRVTIWSQQTQGPANLVRDVSRWQPEHEWRQDIAVVTKWLSGVSPYRWLSAKSNNSTSLKSTFEEKFLPQHPQTSARWPNILCVCSVFSSGSVQLHWSQWPPREGASAKWFCTSKGLLGAGPSGIMAADAIVTDSGAMHIAGVPIVNPSTVVIWEVTPGPGNGLEATPKTTINNAVPPSVDPHSWSGFAPLAAYLFDWQEYFISEGKLGKKQSYKDFTENVSLYCSPVSNFSAYVSPEAASQSTATTTWGSGVTAVSFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQRWESCLKPVVLHQIFGSPTNFGGQPPMQTVWETKVNKSMPPTDDLKSQQAASVGPTSDLQPKPESSGDKAKRVTFDHFNMPSDVRTLARIVYSAHGGEIAIAFLRGGIHIFSGPNFTPVDTYQINVGSAIAAPAFSSTSCCSASVWHDTSKDCTMLKIIRVLPPAVPSSQAKASSPSWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSTQHRLQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVSEPWQASGEMLNSIDCESMAVDPALVLSVQAYVDAVLDLASHFITRLRRYASFCRTLANHAVQAGTGGNRSMVASPAQSSASPAPSQGAQSGTTNSTGSTQMHAWVQGAIAKISGTTDGVSTSTPNPLSGPAPYMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQLPRYIQSSQRMADASMQKPQSNAAGKVEENQTKSMPTAGRPEDSQGARSNQLVAGVKVEDGPASRARLGTGNAGQGYTFDEVKVLFLILMDLCKRTAGLAHPLPVSQVGMSSIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWNRRNMFGGPWSDLDEMGSVDDSSKLSASIDPVDLTSMETCDVSYGVQSLWPRKRRLSERDAAFGFNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWFKCIRCLRQTSAFSPTDSNGPSNQNDRETYWISRWAYGCPMCGGAWVRVV
Length1243
PositionTail
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.08
Grand average of hydropathy-0.222
Instability index48.85
Isoelectric point5.86
Molecular weight134822.60
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04480
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.26|      57|     523|     293|     349|       1
---------------------------------------------------------------------------
  293-  349 (101.40/65.33)	PS.GIMAADAIVTDSGAMH..IAG.VPIVNPSTVVIWEVTPGPGNGLEATPKTTINNAVPP
  838-  898 (88.86/56.13)	PSqGAQSGTTNSTGSTQMHawVQGaIAKISGTTDGVSTSTPNPLSGPAPYMPISINTGTFP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.90|      13|     112|     795|     807|       2
---------------------------------------------------------------------------
  795-  807 (26.05/18.46)	HFITRLRRYASFC
  910-  922 (26.85/19.25)	HFLHRLCQLLLFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.89|      27|     517|     645|     672|       3
---------------------------------------------------------------------------
  645-  672 (48.16/25.49)	RAIAERFWWSLLVGVdWWDAVGC.TQSAA
 1178- 1205 (46.73/20.98)	RDVVTAVWKTGLEGV.WFKCIRClRQTSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.64|      36|     517|     575|     611|       4
---------------------------------------------------------------------------
  575-  611 (62.47/39.39)	IFSGPnFTPVDTY.QINVGSAIAA...P.AFSSTSCCS.....ASVW
 1101- 1146 (48.17/25.35)	MFGGP.WSDLDEMgSVDDSSKLSAsidPvDLTSMETCDvsygvQSLW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.06|      45|     109|     373|     430|       6
---------------------------------------------------------------------------
   74-  123 (75.17/35.33)	SRSNLLHKMSVPDLCRNFSavAWCGKL.NAVACASETCAripSSNANPPFW
  375-  420 (74.90/53.52)	SEGKLGKKQSYKDFTENVS..LYCSPVsNFSAYVSPEAA...SQSTATTTW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.93|      19|     525|     516|     535|       7
---------------------------------------------------------------------------
  516-  535 (29.86/15.30)	ASVGPTSDLQPKPESSgDKA
 1062- 1080 (37.07/15.65)	ASLGPHMQNMPRPRGA.DAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.03|      11|      15|     967|     977|       9
---------------------------------------------------------------------------
  967-  977 (20.55/11.87)	AG.RPEDSQGAR
  983-  994 (15.48/ 6.95)	AGvKVEDGPASR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04480 with Med16 domain of Kingdom Viridiplantae
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