<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04479

Description Uncharacterized protein
SequenceMAIATEKNTVWETVVALTKVAQQKGTDPFLWAIQISSNLSCAGVSLPSIELSHTMVSYILWDNNVPSAWKFLERALMLNMVPPLLVLALLSTRVIPCRHSQPTGYRLYMELLKRHAFKLKSQISVPAFGKVMMSIDHVLCLSQIFDSRASEPDILLVEFVFTIVWQLLDALLDDEGLLELTTEKKSLWAITTREMDIDPYDNYDEKKFEQLDRLKRMNTEMAVEIIGQFFQNGVTSRMIFLVRHNMPKQWSAFTERLELLATNSSTLKNPEILSPKMLSKLTSDARKVSSWEYKKSGEVFSAESAFRSMVFPAQCQETYHSGLWLPLDVVLEDMMDGSQVTATSAVEIITGLVKSLQAINNTTWHDTFLALWIGALRFVQRERDPMEGPVPRLDTRMCVLLSITPLVVADLIEEEENPLDESDNWKERHEPYTRRKSLVSCLQILGDFQSLLSPPQSIVSSANLAAARAMMFVAGIDVADGYFECINVNDLPINCTGNMRHLIIEACIARNLLDTSAYFWPGYVNGQINQFPSRIPSQVPGWSSLVQGVSLRPVMINSMVAAPASSLAELEKIFELAVSGSEDEKIYAATILCGASLIRGWNVQEHIVSFITRLLSPPVPADFVGDDSHLIAYAPMLFVLLIGIAPLDCVQIFSLHGLVPQLAASLMTICEVFGSCVPNVSWTVNGEEISAHAVFSNAFALLLKLWRFNHPPLDYGVGDVPPVVSQLTPEYLLLVRNSLLASSGNILKDHNKRRLSAIVGASCPKPIFVDSFPKLKVWYRQHQACIAAPLSGLISESPVHQIVEVLLNMIFRKISRGVKASATSGSSSSSGPASEDSSLRPQMPAWDILEAVPYVVDAALSACAHGQVTPRELATGLKDLADFLPASLATIVSYFSAEVTRGIWKPALMNGTDWPSPAANLSNVEEQIKKILAATGVDVPSLAAVSSPATLPLPLAAFLSLTITYKLDKVSQRFLNLAGPALESLAADCPWPCMPIVASLWTQKAKRWSDFLVFSASRTVFLHDNNAVVQLFRSCFSSTLGLSTNPSTSRGGVAALLGHGFGSHLNGGISPVAPGILYLRVYRSVREIMYMAEEIISLLMQSVREIVGAGTFKQTRKKLKTGPLYGQVSVDAAMTKVKLAASLAATLLWLSGGQSLVQCLLKETLPSWFISVQRCALEEEEESEEIVSAFRGYALAYFAVLCVAFAWGVDSSSAASKRRPIILGHYLEFIASALDGKISLGCDSVVWQAYVSRFISLMVGCTPNWVVEMDVNVLIRLSKGLVQWNEDIAFALLTTGGMNTMGAAAKLIVESEK
Length1313
PositionTail
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.08
Grand average of hydropathy0.218
Instability index45.49
Isoelectric point5.81
Molecular weight144233.58
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04479
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     354.73|     115|     157|     299|     455|       1
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  299-  428 (177.77/161.41)	VFSAE..SAFRSMVF.......PAQCQETYH.SGLWLPLDVVLEDMMD..GSQVTATSAVeiITGLVKSLQAINNTTWhDTFLALWigalRFVQRERDPMEGPVPRldtrmcVLLSITP....LVVADLIEEEENPLdeSDNWKER
  624-  754 (176.96/98.90)	VGDDShlIAYAPMLFvlligiaPLDCVQIFSlHGLVPQLAASLMTICEvfGSCVPNVSWT..VNGEEISAHAVFSNAF.ALLLKLW....RFNHPPLDYGVGDVPP......VVSQLTPeyllLVRNSLLASSGNIL..KDHNKRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.19|      25|     273|     934|     991|       2
---------------------------------------------------------------------------
  851-  877 (38.52/ 8.63)	AVPyvVDA.ALSACAHGQVTPRELATGL
  934-  959 (36.66/76.03)	ATG..VDVpSLAAVSSPATLPLPLAAFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.91|      36|     319|     563|     607|       3
---------------------------------------------------------------------------
  563-  607 (47.20/51.39)	PAsSLAELEKIFELAVSgsedEKIYAATILCGASlirgW........NVQEHI
  885-  928 (58.71/36.15)	PA.SLATIVSYFSAEVT....RGIWKPALMNGTD....WpspaanlsNVEEQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.60|      27|     216|     979|    1045|       4
---------------------------------------------------------------------------
  236-  263 (46.26/13.41)	SRMIFLVRHNMPKQW..SAFTERLElLATN
 1017- 1045 (43.34/100.40)	SRTVFLHDNNAVVQLfrSCFSSTLG.LSTN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     250.71|      83|    1086|     100|     198|       6
---------------------------------------------------------------------------
  100-  198 (111.54/110.31)	SQPTGYRL.YMELLKRhAFKLKSQISVPAFGKVMMSIDHVL.CLSQIFDSRASepdiLLVEfvfTIVWQlldALLDDegLLELTTEKKSLWAIttrEMDID
 1188- 1272 (139.17/87.42)	SAFRGYALaYFAVLCV.AFAWGVDSSSAASKRRPIILGHYLeFIASALDGKIS....LGCD...SVVWQ...AYVSR..FISLMVGCTPNWVV...EMDVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     157.34|      51|     279|     500|     555|       7
---------------------------------------------------------------------------
  500-  555 (85.94/68.87)	RHliiEACIA...RNLLDTSAYFWpgYVNGQINQFPSRI.....PSQVPGWSS....LVQGVSLRPVM
  781-  843 (71.40/44.03)	QH...QACIAaplSGLISESPVHQ..IVEVLLNMIFRKIsrgvkASATSGSSSssgpASEDSSLRPQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.24|      21|     216|      51|      71|       8
---------------------------------------------------------------------------
   51-   71 (40.50/22.47)	LSHTMVSYILWDNNVPSAWKF
  273-  293 (36.74/19.75)	LSPKMLSKLTSDARKVSSWEY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04479 with Med33 domain of Kingdom Viridiplantae
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