<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04475

Description Uncharacterized protein
SequenceMTSKPGGHNSNGCNNNDGGVGLENWRDYFRRANSDIFDIIEHAIMVAASDCPKEFRVRREKIAELLFTCRLTRCLGCDRVELAVSEVDDGEGEVKVVIKGVNDQFNVVDDDVNGGGGSKGSKVNSTTRENNYDQGVNSDRDHIGEMEIDMMLNELNHESNFTFDDAEALTNEIEEAKEVAEEVLRIKEILLNSQDESDSVLFESLRRLQLMALDVDLLKSTEIGKAVNRIRRHSSKDIRHLARALIDGWKIIVDEWVKATQDLAEGGTPDSVNPSTVDEEEGLPSPPLDEGAFFSTGTMDFSQFFDGMDDDGNPRNCGEFNKNLEVREGVRKPSLAKQDPPKRREEPPKQVTPLIRDNRVQQAKRQEPLSKPNKPLNVQSGPGRPVKPNNGELKLIKDYRVQQKPMVQRRPPPQPEMRSSNDNAVQEKLEATKRKLQERYQQAENAKRQRTIQVMEIQDIPKQGLAKPNAFGKFGNNNRQWANGRR
Length486
PositionUnknown
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.05
Grand average of hydropathy-0.894
Instability index45.41
Isoelectric point5.39
Molecular weight54827.62
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04475
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     147.77|      35|      38|     327|     364|       1
---------------------------------------------------------------------------
  327-  361 (64.57/30.55)	REGVRKP..SLAKQDPPKRREEPPKQVTPLIR...DNRVQ
  366-  402 (56.62/29.00)	QEPLSKPnkPLNVQSGPGRPVKPNNGELKLIK...DYRVQ
  403-  426 (26.59/ 9.19)	.............QKPMVQRRPPPQ...PEMRssnDNAVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.47|      19|      20|     167|     185|       2
---------------------------------------------------------------------------
  167-  185 (28.10/18.36)	EALTNEIEEAKEVAEEVLR
  188-  206 (27.98/18.26)	EILLNSQDESDSVLFESLR
  211-  229 (26.40/16.85)	MALDVDLLKSTEIGKAVNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.07|      15|      22|      78|      92|       3
---------------------------------------------------------------------------
   78-   92 (24.28/12.76)	DRVELAVSEVDDGEG
  103-  117 (26.79/14.72)	DQFNVVDDDVNGGGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.13|      13|      22|     289|     303|       4
---------------------------------------------------------------------------
  289-  303 (19.02/15.71)	DEGAFFSTGtmDFSQ
  310-  322 (26.11/14.38)	DDGNPRNCG..EFNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.35|      31|     113|       3|      35|       5
---------------------------------------------------------------------------
    3-   35 (54.47/34.80)	SKPGGHNSNGCNNN.DGGVGLEnwRDYFRRANSD
  118-  149 (50.88/25.88)	SKGSKVNSTTRENNyDQGVNSD..RDHIGEMEID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.63|      10|      14|     260|     269|       6
---------------------------------------------------------------------------
  260-  269 (18.82/11.39)	TQDLAEG.GTP
  276-  286 (14.81/ 7.38)	TVDEEEGlPSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04475 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DLAEGGTPDSVNPSTVDEEEGLPSPPLDEGAF
2) QFFDGMDDDGNPRNCGEFNKNLEVREGVRKPSLAKQDPPKRREEPPKQVTPLIRDNRVQQAKRQEPLSKPNKPLNVQSGPGRPVKPNNGELKLIKDYRVQQKPMVQRRPPPQPEMRSSNDNAVQEKLEATKRKLQERYQQAENAKRQRTIQVMEIQDIPKQGLAKPNAFGKFGNNNRQWANGRR
262
303
293
486










Molecular Recognition Features






MoRF SequenceStartStop




1) NNGELKLIKDYRVQQKPMVQ
389
408