<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04474

Description Uncharacterized protein (Fragment)
SequenceHDTLPQQPKMDQLEKLRIFKNMLERLMQVLQITKNNIQPNHKEKLPSFEKQIVGLLNTNRPRRPVPSMQSGQILPPQMQSMQQAQQPHSQITQAQSHEVGVNPQLQSMNLQGSVTTMQQSNVPSLQHGSVPSISAITSSQQSMGGPLQTNPNLDSGQGSTPSSVQQVAMASLQQNPVGAPQQGNMNSLQSQNGVNMLQPNIQSSSNMLQNQHLKQQQEQQIMQNQQLNLKQQLQNRHMQQQMMQKQQLLQQQQHLHQQVKQQQASQISAHQMPQLHQNDVNEKMRQGLGLRSGVFPQHLSSAQRFAHQQLKPVASFPVSSPQLFQAVSPQINQHSPQIDQQNLQQSVSKGGTPLQSANSPYVPSPSTPLAPSPMPGDAEKPAVSSLSNVTNIGNQHSGVPAASQSLSIGTPGISPSPLFECAGLDVAHGNSSALNSGKSSLTEQPLDRLLKAMKSISPKALNASVCDIGSVVSMIDRIAGSAPGNGSRATVGEDLVAMTKCRLQARNFQTQDGSTGTKRMRRYTSAMPLNVAATVGSMNDNFKQFAGYETSELESTATSSVKKSRTEVCV
Length570
PositionTail
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.02
Grand average of hydropathy-0.654
Instability index69.78
Isoelectric point9.74
Molecular weight61949.12
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04474
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     137.12|      24|      24|     209|     232|       1
---------------------------------------------------------------------------
   63-   84 (28.27/ 6.66)	..RPVPSMQSGQILPPQMQSMQQA
  209-  232 (41.76/14.16)	QNQHLKQQQEQQIMQNQQLNLKQQ
  234-  252 (33.44/ 9.53)	QNRHMQQQ....MMQKQQL.LQQQ
  255-  278 (33.66/ 9.65)	LHQQVKQQQASQISAHQMPQLHQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     202.30|      41|      42|     477|     517|       2
---------------------------------------------------------------------------
  369-  410 (43.60/24.22)	.LAP..SpMPGDAE.....KPAVS.S.....LSNVTNIGNQHSGVpaASQS.LSIGT
  420-  472 (40.29/21.82)	ECAGldV.AHGNSSalnsgKSSLTEQpldrlLKAMKSISPKALNA..SVCD.IGSVV
  477-  517 (69.49/43.01)	RIAG..S.APGNGS.....RATVGED.....LVAMTKCRLQARNF..QTQD.GSTGT
  522-  558 (48.93/28.09)	RYTS..A.MPLNVA......ATVG.........SMNDNFKQFAGY..ETSElESTAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     189.27|      30|      30|     111|     140|       3
---------------------------------------------------------------------------
  117-  150 (29.28/ 7.41)	MQ..Q.SNVP.SLQHGSVPS.I.S..AITSSQqsmggplqtN.....
  151-  179 (28.25/ 6.90)	......PNLD.SGQ.GSTPSsV.QqvAMASLQ.........QNPVGA
  180-  204 (34.24/ 9.88)	PQ..Q.GNMN.SLQ..SQNG.V.N..MLQPNI.........QSS...
  284-  306 (34.94/10.23)	MR..Q.G.L..GLRSGVFP....Q..HLSSAQ.........R...FA
  307-  335 (30.70/ 8.11)	HQ..QlKPVA.SFPVSS.PQ.LfQ..AVSPQI.........NQ..HS
  336-  367 (31.86/ 8.69)	PQidQ.QNLQqSVSKGGTPL.Q.S..ANSPYV.........PSPST.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.29|      12|      30|       7|      20|       4
---------------------------------------------------------------------------
    7-   20 (17.02/13.75)	QPkmDQLEKLRIFK
   38-   49 (23.27/11.91)	QP..NHKEKLPSFE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04474 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FQAVSPQINQHSPQIDQQNLQQSVSKGGTPLQSANSPYVPSPSTPLAPSPMPGDAEKPAVSSLSNVTNIGNQHSGVPAASQSLS
2) LQITKNNIQPNHKEKLPSFEKQIVGLLNTNRPRRPVPSMQSGQILPPQMQSMQQAQQPHSQITQAQSHEVGVNPQLQSMNLQGSVTTMQQSNVPSLQHGSVPSISAITSSQQSMGGPLQTNPNLDSGQGSTPSSVQQVAMASLQQNPVGAPQQGNMNSLQSQNGVNMLQPNIQSSSNMLQNQHLKQQQEQQIMQNQQLNLKQQLQNRHMQQQMMQKQQLLQQQQHLHQQVKQQQASQISAHQMPQLHQNDVNEKMRQGLGLRSGVFPQHLSSAQRFAHQQLKPVA
324
30
407
314










Molecular Recognition Features






MoRF SequenceStartStop




1) KLRIFK
15
20