<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04468

Description Uncharacterized protein
SequenceMTALEVFISLRTKSVLHLFASTGRFLGLEVYEQGLAILEIPKFMLNGLDMLLMGFPQCGALYYLMIQIDTGGDFKPLFKLLETQPNTGGGSSSVGKAGHIGLLKCFDIADLELVDDDLNLSLVNMDNLTFDLPNSIESSSCGLHQSFLKPQSSFSCMVDEMFKFEKGKMPDSMNGLVSEQKDNSHKRFFSDIFPPNLFSQESTDRLSKRRKISSHEYLAVSQAFTSPETDMVYRHAYERLRADANHGLAPNIYLTHLLHVVRNCSICIKHAQLTSQMDALQIPFVEDIGARMTEFSKLSFRLPFLRDNPWPKLCLCFGRSGTMSWDVKVNDTYFKELWELQKGSITTSWGSGIRNANTFDIDSHICCDSNGIVLSYKTVGSDSIQNLVSDLQRLYNARLFACGMRKLLMVKPCMTFQDSTSNSVSKIKGSEDSTDKMLEQSRKHFKIEAVGLMSLWFCYGLMPITIHFVVEWESGKEGCTMHLSPDQLWPHTKFLEDFINGGEVASFLDCVQLTAGPLYSLGSAIRPARVPHGTSILSPAIKHNVLMHGQGILPSASSSSAFQTASSGSVVSSVVPLGNHNIHPGSMLSSVNRGGPGIIPSSLLPSDVSVVLRGPYWIRIIYRKQFSIDMRCYAGDQVWLQPATPPKGGPISGGSLPCPQFRPFIMENIAQGLNALETGFAGNTNSTSSVAHMVSSGNRSNFGISRPTSLAGSQGAGGLSRIGNSLTACSGLSAIISGFPSRLSPTTSAPVHGKADLNISFIGLGDDGGYGGGWVPIAALKKVLRGILKYLGVLWLFAQLPGLLKAILGSILNENEGGILNLDQEQPALRFFVGGYVYAVSVHRVQLLLQVLSVKRFHHHQQQQQTQSNTQEELASAEINEICDYFSRRVASEPYDASRVASFITLATLPISVLREFLKLTSWEKKNNQGATRVELCLENHVRSSHLVAAKSNIHHNRDYSTVEFSLTFVLDSSLVPQVNAAGGAAWLAHCVSVRLKYSFGESACGITLISIDGSHGGKACWCRPEDWEKIKHRLSRTVNDFGSGNAMATEISQGNRLRLISELLRKTLQACLQQNFKDSSASASCLSNTSGS
Length1093
PositionTail
OrganismZostera marina (Eelgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zosteraceae> Zostera.
Aromaticity0.08
Grand average of hydropathy-0.068
Instability index47.59
Isoelectric point8.04
Molecular weight119705.55
Publications
PubMed=26814964

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04468
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.64|      12|      14|      61|      72|       1
---------------------------------------------------------------------------
   61-   72 (23.36/12.17)	LYYLM.IQIDTGG
   77-   89 (18.28/ 8.20)	LFKLLeTQPNTGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.51|      16|      18|     271|     287|       2
---------------------------------------------------------------------------
  271-  287 (23.72/21.65)	AQLT..SQMdALQIPFVED
  290-  307 (23.79/15.35)	ARMTefSKL.SFRLPFLRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     156.47|      36|      43|     520|     555|       3
---------------------------------------------------------------------------
  520-  555 (64.83/36.18)	SLGSAIRPARVP.HGTSI....LSP.AIKHNVLMHGQGILPS
  566-  601 (54.58/29.30)	SSGSVVSSV.VP.LGNHN....IHPgSMLSSVNRGGPGIIPS
  639-  672 (37.06/17.55)	WLQPATPPKGGPiSGGSLpcpqFRP.FIMENI...AQG....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.09|      12|      17|     149|     160|       4
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  149-  160 (22.57/15.66)	KPQSSFSCMVDE
  168-  179 (21.52/14.53)	KMPDSMNGLVSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.06|      17|      37|     707|     723|       5
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  707-  723 (30.93/19.06)	PTSLAGSQGAGGL..SRIG
  745-  763 (27.12/15.69)	PTTSAPVHGKADLniSFIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.63|      39|     251|     106|     145|       6
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  106-  145 (64.46/40.34)	FDIaDLELVDDD....LNLSLVNMD...NLTFDLPNSIESS..SCGLHQ
  359-  406 (56.18/30.86)	FDI.DSHICCDSngivLSYKTVGSDsiqNLVSDLQRLYNARlfACGMRK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04468 with Med14 domain of Kingdom Viridiplantae
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