<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04456

Description Uncharacterized protein
SequenceMYWRDFFGGDNKNIFDIIKNSILIAAADFPKEFESQRDQIAQTLFTCGTARCHNCNSLELHLAKNEICEFRDGDGGRIEDGGKESKVNSSTTNDLIGNCSYEDVEALTEEIMEENQIVTEVYRIKEILINKNDESDSMLYESLRRIQLMRLSVEIIEETEIEKAINSLRRHRSKEIQHLVQTVIMEWKELASDWVKVESFRQEPTPESKNLSCFDGDDDYGLLSPPLDEGAFFATAHTTSMELSKFFDGMDNDGNLLVDDEEKGGSPVKINSSSHQSCGNPVKINSSSHQSCGNPVKINSPSHQSSECDDYSNWLQEADHGGYNQRKKVQETKTKPPKSNGGDNGGSRLSGTFDLKKRQNLSHCFASTSSMKSDKPDMTKKVQKKPMMATVENNTKSSDDNSFRTKIEIAKRLLQERYSEANNAKKQKTIQVMELEDLPKRGNNRRRSQPKQGNSAKPHGRLWPNRR
Length467
PositionUnknown
OrganismZostera marina (Eelgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zosteraceae> Zostera.
Aromaticity0.06
Grand average of hydropathy-0.927
Instability index56.44
Isoelectric point5.88
Molecular weight52938.37
Publications
PubMed=26814964

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04456
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.05|      16|      27|     265|     280|       1
---------------------------------------------------------------------------
  265-  280 (33.85/19.41)	GSPVKINSSSHQS..CGN
  293-  310 (30.21/16.64)	GNPVKINSPSHQSseCDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.90|      31|      31|     200|     230|       2
---------------------------------------------------------------------------
  200-  230 (59.58/34.35)	FRQEPTPESKNLS.CFDG.DDDYGLLSPPLDEG
  232-  264 (47.33/25.99)	FFATAHTTSMELSkFFDGmDNDGNLLVDDEEKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.49|      18|      20|     414|     431|       4
---------------------------------------------------------------------------
  414-  431 (27.51/14.88)	LQERYSEANNAKKQKTIQ
  435-  452 (28.98/16.02)	LEDLPKRGNNRRRSQPKQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04456 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DHGGYNQRKKVQETKTKPPKSNGGDNGGSRLSGTFDLKKRQNLSHCFASTSSMKSDKPDMTKKVQKKPMMATVENNTKSSDDNSFRTKIEIAKRLLQERYSEANNAKKQKTIQVMELEDLPKRGNNRRRSQPKQGNSAKPHGRLWPNRR
2) NDGNLLVDDEEKGGSPVKINSSSHQSCGNPVKINSSSHQSCGNPVKINSPSHQSSECDDYSNWLQE
319
252
467
317










Molecular Recognition Features






MoRF SequenceStartStop




1) FRTKIEIAKRLLQERYSEA
2) KTIQVMELEDLPKRGNNRRRSQPKQGNSAKPHGRLWPNRR
3) NLSHCFASTS
403
428
360
421
467
369