<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04454

Description Uncharacterized protein
SequenceMMEGSNNRWAPVHGDVGEVNSTEWRSQLQSEARQRIVNKIMDTLKKHLPISGNEGLGELKKIAVRFEEKIYTAATSQSDYLRKISMKMLTMEQKTHGGGVNGNSLSSTSGAVNQSSDPVNLMQPQVRNQGPSMQVPVTNQSQSRQLLAQNLQSNISSTTVQGSGGLSPALTSITGMTQPNISSLGQNQNMHAMPGIAQNSVNNIPGQSIPQNMYASSQRQMPGRHQQQSIISQHQQSQNHILYQQQLIKQKMQQSSLLQSQIPQQQQQQPVMSQNQLQSSQQPLIQISSGLQSNQIPLQHSQPSMIQSVSQSGIQQNQQNSVQQSASSLHQQHPQSLARQQQSSQQPNLHQQTSSLMQQQPTSISQQSNVLPSHQQQIMGHQSSLASIQQNQLLGQHNNISDLQQQQLHHQRLSNQQNGLMSMQQPQQMINQQNISLHQQQQMPQSNVSGMQQQSSLQSQHQSQMLGSAIPASNMQSQNPNFRSHSKASGQHLQQTSPVLITQAQSSQQLIPQLQTQAQAAHLQQQMGLQQMHRRIHGPASILQSQITTEQKPQFQSQRVLSEAPSTSVDSTGQTSEPVPEWQEEVYQKILSLKEAYYPDLNEMSQKLGLKLQQEHLLQSGSAKQAEQLENMKKFKSMLDRLIQMLLMSRQNIPLGMKDKIQTYEKQIVGMLTNRPRKGFSQSQQQLQHTGGQNLAMSQSPSQVSQLQQADSQLNQISQSQSGSLPLSTQTGVPTTQQNIMSSMQSGANIESGNALSSAQKGAIGSFQVGGLGTLQQGSIGASLQNNVSLMQNNANPLQRNALQHQVKQEHQQHPFVIQKKLQQQLIQQRLQQQQPQHQQLQQKQQQNIQLQGGQMQQHHPINEMNELNTRQISNIKPVPFQSSYQIGQRQTYYQQQPKIPTSFPISSPQSIPIPSPQISQHSSPQIDQQPLLSSISKSLTPLQSVSSPVVDPSSPVPSTQQIDHEKQLSNISSLSNPGNTVPQQSGPIVQSLADFTPGISSSSMLDGKINATERPLDYLLRMVGSSSPNLLASSASDIGSVINMIDQIAGSAPGNGSRAAVGEDLVAMTKCRMQARNFMSQDVGSATKKMKRHTSAMPLNVVSSAGSVHDSLKQTSIDTSEFESTATSRIKRAKIEANHALLEEIRFINQQLIDTSVDVTDEDIDSISSTTDGEGTVVKFTYLAISLSPTLKSQFAASRVSPILPLLLFIPPSYPCCSPVLLDKISVEMSNESEDLSVKVKSLFSSSLRGLSSPMCLKEMARSWDVCVRTVVSEFAQLSGGGTFSSKYGTWKNIAKV
Length1298
PositionTail
OrganismZostera marina (Eelgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zosteraceae> Zostera.
Aromaticity0.03
Grand average of hydropathy-0.650
Instability index78.14
Isoelectric point9.37
Molecular weight142799.55
Publications
PubMed=26814964

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04454
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|    1161.39|     159|     160|     207|     366|       1
---------------------------------------------------------------------------
   84-  186 (91.72/13.01)	.....................................ISMKMLTMEQ...KTHGG..GVNGNSLSSTSgavN.QSS.DPV...................NLMQPQVRNQGPsmQVPV....T.NQSQ.SRQLLAQ....NLQSNisSTT......VQGSgglSPAL.TS.I...TG..MTQ.PN.......IS.SLGQ......
  187-  337 (260.16/51.82)	..NQ......NM..H.AMPG..IAQN..SVNNIPGQSIPQNMYASSQ...RQMPG..RHQQQSIISQH...Q.QSQ.NHIlYQQQLIKQKMQQ.....SSLLQSQIPQQQQ..QQPVMS..Q.NQLQSSQQPLIQI.SSGLQSN..QIP......LQHS...QPSMIQS.V.SQSG..IQQ.NQQNSVQQSAS.SLHQQHPQSL
  338-  466 (195.62/36.14)	ARQQQSSQQPNL..HQQTSS..LMQQ..QPTSISQQS...NV..........LPS...HQQQ..IMGH...Q.SSL.ASI.QQNQLLGQHNNI.....SDLQQQQLHHQR.......LSnqQ.NGLMSMQQPQQMI.N...QQN...IS......L.HQ...QQQMPQSnV.S..G..MQ...QQSSLQS.......QHQSQML
  472-  620 (154.20/26.92)	ASNMQ.SQNPNFrsHSKASGqhLQQT..SPVLITQA......................QSSQQLIPQL...QtQAQaAHL..QQQMGLQQMHRrihgpASILQSQITTEQK..PQ.FQS..Q.RVL..SEAPSTSVdSTGQTSE..PVP........EW...QEEVYQK.IlSLKE..AYY.PDLNEMSQKLGlKLQQEHLLQS
  621-  772 (170.36/30.52)	GSAKQAEQLENM...KKFKS..MLDRliQMLLMSRQNIPLGMKDKIQtyeKQIVGmlTNRPRKGFSQS...Q.QQL.QHT.GGQNL...AMSQ.....S...PSQVSQLQQ..AD...S..QlNQISQSQSGSLPL.ST.......QTG......VPTT...QQNIMSS.M..QSGanIESgNALSSAQKGAI.GSFQ..VGGL
  773-  888 (153.44/26.75)	GTLQQGSIGASL...QNNVS..LMQN..NANPLQRNAL........Q...HQVKQ..EHQQHPFVIQK...K.........LQQQLIQQRLQQ....................QQP..Q..H.QQLQQKQQQNIQL.QGGQMQQ..HHPinemneLNTR...QISNIKP.V.P.....FQ............S.SY.....QIG
  889-  995 (135.90/22.85)	QRQTYYQQQPKI.....PTS..F......PIS.SPQSIPIPSPQISQ...HSSP...QIDQQPLLSSI...S.KSL.TPL...QSVSSPVVDP.....SS...............PVPS..T.QQIDHEKQ.LSNI.SSLSNPG..NTV......PQQS...GP.IVQS.L.AD..............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.26|      20|      59|     998|    1031|       3
---------------------------------------------------------------------------
  998- 1030 (22.08/48.97)	PGISSSsmldgkINATErpldyllRMVGSSSPN
 1037- 1056 (35.18/19.80)	SDIGSV......INMID.......QIAGSAPGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.74|      13|      15|    1070|    1084|       5
---------------------------------------------------------------------------
 1059- 1075 (12.51/14.94)	RAAVGEDLvamTKcRMQ
 1077- 1092 (18.24/ 6.93)	RNFMSQDVgsaTK.KMK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04454 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPQLQTQAQAAHLQQQMGLQQMHRRIHGPASILQSQITT
2) IQQRLQQQQPQHQQLQQKQQQNIQLQGGQMQQHHPINEMNELNTRQISNIK
3) LQSVSSPVVDPSSPVPSTQQIDHEKQLSNISSLSNPGNTVPQQSGPIVQSLA
4) LTNRPRKGFSQSQQQLQHTGGQNLAMSQSPSQVSQLQQADSQLNQISQSQSGSLPLSTQTGVPTTQQNIMSSMQSGANIESGNALS
5) MEQKTHGGGVNGNSLSSTSGAVNQSSDPVNLMQPQVRNQGPSMQVPVTNQSQSRQLLAQNLQSN
6) QQPKIPTSFPISSPQSIPIPSPQISQHSSPQIDQQPLLSS
7) QSSLLQSQIPQQQQQQPVMSQNQLQSSQQPLIQ
8) SLQNNVSLMQNNANPLQRNALQHQVKQEHQQHP
9) SSGLQSNQIPLQHSQPSMIQSVSQSGIQQNQQNSVQQSASSLHQQHPQSLARQQQSSQQPNLHQQTSSLMQQQPTSISQQSNVLPSHQQQIMGHQSSLASIQQNQLLGQHNNISDLQQQQLHHQRLSNQQNGLMSMQQPQQMINQQNISLHQQQQMPQSNVSGMQQQSSLQSQHQSQMLGSAIPASNMQSQNPNFRSHSKASGQHLQQTSPVLIT
10) STTVQGSGGLSPALTSITGMTQPNISSLGQNQNMHAMPGIAQNSVNNIPGQSIPQNMYASSQRQMPGRHQQQSIISQHQ
511
827
943
672
91
896
254
783
288
157
549
877
994
757
154
935
286
815
502
235










Molecular Recognition Features






MoRF SequenceStartStop




NANANA