<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04448

Description Uncharacterized protein (Fragment)
SequenceMEEDSNKSPWENVLEFTKMAQKKEIDTMTWAIRVSSILGYFNIPLPCPELAEVLVAHICWDNNVPVLWKYLEKVMSSRIVPPMFAIALLSTRVFPIRGKNPIAYRLYMEILKRYCFDFTSQMDPNFKRIRMMVDDVLHLSKRFGAQAHEQGVFEVEYIFCILWQLLDATLEDEGLLDSSLERIPNLVNGPHDMELDIVESIDQSKNEYYEKLVKENTTMAIEVIDQFLHHKVICRLLSLIHQNMPCLWKRFSQCLQMLASNSLALKNSTVSPDRLINWSFDIVNKKFWKFKSSKYRELCPISSGPFESPGGHCHGPSRSAIWVPLDLYLEDAVDGSISATNAIETISGLLKVLQTVNRTTWHEAFLGLWMASLRLVQRIKDLIEGPVPYEDARMCLLLSITTLSIADVINEEKCTTNNQTENSNISQLQDTVLQGERHRALVHSLQLLGNYESLLVPPPSFIYVANQAAAKALAFVSGIPISVGFFESIGTNNKLNCSGNMWHLIVEACIARNLLDTSAYLWPGYVNDHTNQIPQNTSDEGSDWSALMEGAKLTTSMMKIPAS
Length563
PositionTail
OrganismZostera marina (Eelgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zosteraceae> Zostera.
Aromaticity0.09
Grand average of hydropathy-0.068
Instability index42.38
Isoelectric point5.53
Molecular weight63874.95
Publications
PubMed=26814964

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04448
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.66|      40|     179|     300|     342|       1
---------------------------------------------------------------------------
  300-  342 (69.68/49.07)	PISSGPFESPGGHCHGPSRSAIWvplDLYLEDAVDGSISATNA
  480-  519 (72.98/43.84)	PISVGFFESIGTNNKLNCSGNMW...HLIVEACIARNLLDTSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.19|      47|     179|      62|     120|       2
---------------------------------------------------------------------------
   62-  120 (71.79/86.38)	NNVPVLWK....YLEKVMSSRIvppmfaiALLSTRVFPIRGKNpiayrLYMEILKRYCFDFTS
  242-  292 (82.40/63.03)	QNMPCLWKrfsqCLQMLASNSL.......ALKNSTVSPDRLIN.....WSFDIVNKKFWKFKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     169.39|      57|     205|     181|     241|       3
---------------------------------------------------------------------------
  181-  241 (86.35/91.09)	ERIPNLVNGPHDME.......LDIVE.SIDQSKNEyyEKLVKENTTMAIEvIDQfLHHKVI..CRLLSLIH
  377-  443 (83.04/67.37)	QRIKDLIEGPVPYEdarmcllLSITTlSIADVINE..EKCTTNNQTENSN.ISQ.LQDTVLqgERHRALVH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04448 with Med33 domain of Kingdom Viridiplantae
Unable to open file!