<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04431

Description Uncharacterized protein
SequenceMLMTHGEMHRYSASSYGNGFRNAPVGVPPLRDRVSARADSASFTSNHALNSRKPTPPLSPYKLKCEKEHLNCRLGPPDFNPQTANCPEETLPKEYISFGYKETVEGIEESQEIKLTQIGNMSKSDILNCKEAIKQRSRIMNKSRAEKRKASQVYGVPLSGNLLAEAGVFPEQRQFKEDPRRKWFEGLSQMNTSLQSLGAVVPYGYRKKALIDVIIQHDIPFERACWFIKVSYLNQVPPKTAGVFAAGTPDNTQTVRTELWTTDLIEYLHNFMGEFLAKDGFCTPEQSRNKALQNPLGFSHQRNDTLSDVPNIGQSSLKFKLDYLLRLLTWTNSERLISHSLILQWALTQLQEKESLDVLEFLLPIIVDLIESLSLSQTYVRIFVDIAVRFLNSHYPDGMNPMSNVRKPFLASTLVEILRSLLVFVPDTFVGLDCFPLPIILVPDNMSSNVPFFNIHGAKGDVDQESQYSYNRYCSLGHVASSIRMRASSLTMIANANFQGHGVAKVLYALDNATVNGNSKAAYTFLFEELPNVTSSDSWISEAVFFLCEWATCDFRDIRNSMPRDVKLTGRNDHCQVYTAVLLLKYWMGSMHSSDGILDDENRTSDIFESPCALHDIIVCWLDHHEFGKGEGFKRILILILECIRHGIFYPQAYVRQLILSGTMDGAGIKLDIRRQRNHYQILKHLPGAYLFDVLEESKISETEMLHNTVNTYTNERRFVLRDLCNFDVVNRKENNKNARCHSSKKVKLKSKVCQIKSAICTLLHFPQSCHSTIETETDDIQLNSTKKLDNDNCTKVKRQKTSHERALHTPIFLPNETDDNDTWWMKKGTDSLDSSKSEQPLKSVTHFSRISKCYQKTHILGHMQDLRMESSQGASTSHACDNKIICSNENSQVDSEFPKLLGSSEMNLNDVGKALKTLRLLERRFVVIWLLKSIRLLIEGNRRPRSKFVNHDAPISQPTDRKGVQWKIGEDELSIIMYLLDISADLYSLVKILLWLLPKIVKEGTSTPVPENKENHICNINESFMLSALQRYENVIVATELLPEFLSSSMDRAVFDSILFVYAKNILKKYRTETSVVNWLKDFKASCHPRLLEELKAATSLDCDIGIKGLDSDCIQKILSGKTSKASQWMRRMVEGKLEDQFYSKVRTHFSSATDTRSSTFGKWDDGYQIAKQIVATLLDFFRHNNSTSQEVKPSLVVLAISMIVSNVGSAIAKLPDFTSNGHFQSLSSTAASLSCIQGVVNIHLACMCLLKEALGECWGHVFDIVLATEASSHISAVFSSRRVPRGQFQQSSEVHGMSNDLLIAKKFSERASEISAAMSSLIVGAIVHGVSSLERMITAFKLNKTLDIRQFIRNSMLSLNGRSRLGTNYKPDHSIAVTVHWFRLLVGNFRTLFDGLIVDVLGKARSLALIRMQLKIPLNLVFPLAYSIFTIVIWRPYIVNRDSATCEDIDLHNSFSIAIGDAVKHHPFRDLCLHDTRSLYDLISSDKSECVFGAMLEQHIPDKRFKTMAFLPLRGRLFLNAIVDCSMPSFSETNGKNEAKLLDQLVHVMDTLQPAKFHWQWLELRLLLNEQALMEKIETDNMSVVDALHSLSTTAENGALSANEDAFTDIVFTRLLVRPDATPLYSELFHLLGKSLEEKLLLHAKWFLGGNDVLLGRKSVRQRLLNIAQLRGISTKSQAHFCRPWGWVISNSDDVCENMTDNSKLETNSLEEGEVAEDEPTQPFGSVGLKNRQLYATDKAFSELILPFIDRSSDEARSTFFMDLIKQLNTIYQFLNSFTCSNGKQNTGVLSSGVNDGSANKATIRKGICGGSPGIARRSATVSKDPTPPSAVALKASIWLRMHFLLRLFPTIYQVRETSSRKLRNALAFSLLHLLGTQLVQGDIALSFEESVMYKSLGISGENLFDIMLALLHATLSRFQPSWLKSSRSTTSSNLKIKYSRDFSVYDRETVEGLQAELDRMKYLPESIRRRLQSAMTMLPPIRPQILNCAPPSLLHKKDKEVDPWTLLEQGVVSGGSNSSRSSDELNKPPHWLEGCVRVKRRHLTYIGPMNDDEL
Length2057
PositionKinase
OrganismZostera marina (Eelgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zosteraceae> Zostera.
Aromaticity0.08
Grand average of hydropathy-0.239
Instability index44.27
Isoelectric point8.40
Molecular weight232240.59
Publications
PubMed=26814964

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04431
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     168.70|      40|      91|     437|     476|       1
---------------------------------------------------------------------------
  437-  476 (68.56/48.78)	LPIILVPDN..MSSNVPF.........FNIHGAKGDVDQESQYSYNRYCSL
  481-  525 (32.38/18.40)	SSIRMRASSltMIANANFqghgvakvlYALDNATVNGNSKAAYTF......
  530-  568 (67.76/48.11)	LPNVTSSDS..WISEAVF.........FLCEWATCDF.RDIRNSMPRDVKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.19|      27|      90|    1378|    1404|       3
---------------------------------------------------------------------------
 1378- 1404 (49.64/31.78)	AVTVHWFR.LLVGNFRTLFDGLIVD....VLG
 1464- 1495 (41.55/25.31)	AVKHHPFRdLCLHDTRSLYDLISSDksecVFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.23|      18|      19|      47|      65|       4
---------------------------------------------------------------------------
   47-   65 (30.66/23.04)	HaLNSRKPTPPLSPYKLKC
   69-   86 (38.57/24.77)	H.LNCRLGPPDFNPQTANC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.70|      26|     993|     908|     936|      11
---------------------------------------------------------------------------
  908-  936 (36.57/31.80)	NLNDVGKALktLRLLERRFVVIWlLKSIR
 1905- 1930 (48.13/29.89)	NLFDIMLAL..LHATLSRFQPSW.LKSSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     246.17|      78|    1127|     589|     675|      12
---------------------------------------------------------------------------
  589-  675 (124.68/125.77)	GSMhssdGIlddENRtsDIFESPCALHDIIVCWLDHHEFGKGEGFKRILILILECIRHGI.FYPQAYVRQ...LILSGTMDGAGIKLDIRR
 1727- 1808 (121.49/95.17)	GSV....GL...KNR..QLYATDKAFSELILPFIDRSSDEARSTFFMDLIKQLNTIYQFLnSFTCSNGKQntgVLSSGVNDGSANKATIRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.07|      15|     733|     111|     127|      13
---------------------------------------------------------------------------
  111-  125 (25.08/18.35)	QEIKL.TQIGNMSKSD
  131-  146 (19.99/ 6.38)	EAIKQrSRIMNKSRAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.96|      23|    1127|     181|     204|      17
---------------------------------------------------------------------------
  181-  204 (37.81/35.62)	RKWFEGLSQMNTSLQSL..GAVVpYG
 1307- 1331 (34.15/24.92)	KKFSERASEISAAMSSLivGAIV.HG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04431 with Med12 domain of Kingdom Viridiplantae
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