<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04430

Description Transcription elongation regulator
SequenceMPSSELQPLEVEENASTSEFMPVQVVNLDNKESVSCQQVLPSAASPAKQPLDGPDFESSSCIQVSRNTPENSSTTIVSSNHGYDVPKEIINRINDPLPTNILRLPDFIPSFSYNIAPQMVSPTAPPEQSPSDSITGLTAPMSPASLQPPVPGKSSGNKPFFSFNVVPHANISPAPGQQFQHTTATNQSQPQVGNLPMFMYSQPSDPEKPAGIGSKITGGKALPVPFQNNVDTKAVLVSTSSNNPTCLDPGITSKLARPSFNASPRMPGIFGSSRPHGSLPSRPLSSNVAGHPMVPDSYASNKSFPPSSYSATPNSVSFNGQPNLYQPPNQYLHPAATPSPASWLQHGVVHNPPFLTYPGLMVAPSPFQYGIPSHTPIRPTGLSTPSTSVEKSSFATEKTILPPSDLDKQTDSLKNNEVCIANNVINAWMAHKTEEGVIYYYNSLTRVSTYDKPLCFKLEPDRIASQPTPVSWERLSGTDWTLVRTNDGKKYYYDTKNKVSSWQIPQEVEELENHKDLDVSKASPVPLHILSSEIDNGPIVSNLDKPAFDEGGSSAQIRNSVTSVPSSTLDLVKKKLNDAGGPPLSSPLHASSIPLVLNSDSPKITEISTHSQHAESNKEKLKDPSGDGNLSESTSDSEDTESGPTIEQCMMQFKEMLKERGIAPFSKWDKELPKIIFDSRFKAVPSHATRRSLFEHYVRTRAEEERKEKRMAQKAAIEGFKKLLEEALEDINKRINYHTFKKKWGNDSRFEALNYKDRELFFNERILALKKASEQKIQATRAVVVSEFESMLKDSCHITASSRWSMVKDSFRNDPRYNSIKHEEREALFNEYLSKLKALKDESEIAANAEREEQDKLKKREQEMRKRKQRDEQEMESLRLKILKKEAETSYHALLVETIKDPKASWTESKPKLEKDPQGRFTSCNLVQADLENIFRVHVKSLYGRCVQDFCTMLTELITPEAALSQVTDKGKNILTSWSEAKRHIKHDLRYLKISSKDRENLWARHVKEISSPKSKPVSKEKMDGNWKMIKPSSSDNYHPFRHRGSSHH
Length1049
PositionUnknown
OrganismZostera marina (Eelgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zosteraceae> Zostera.
Aromaticity0.07
Grand average of hydropathy-0.708
Instability index60.34
Isoelectric point8.07
Molecular weight117041.32
Publications
PubMed=26814964

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04430
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     319.57|      66|      66|     705|     770|       1
---------------------------------------------------------------------------
  654-  704 (58.27/33.83)	....K........................EM.LKERG.IAPFSKW.DKELPKI.............IFD..SRFKAVpSH..ATRRSLFEH.yvRTRAEE
  705-  770 (103.67/66.09)	ERKEK........................RM.AQKAA.IEGFKKLLEEALEDINKRINYHTFKKKWGND..SRFEAL.NY..KDRELFFNE...RILALK
  771-  840 (83.07/51.45)	KASEQ........................KIqATRAVvVSEFESMLKDSCH.ITASSRWSMVKDSFRND..PRYNSI.KH..EEREALFNEylsKLKALK
  852-  935 (53.12/30.17)	EEQDKlkkreqemrkrkqrdeqemeslrlKI.LKKEA.ETSYHALLVETIKD..PKASWTESKPKLEKDpqGRFTSC.NLvqADLENIF...........
  977- 1003 (21.45/ 7.68)	.........................................................SWSEAKRHIKHD..LRYLKI.SS..KDRENLW...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     486.17|     136|     139|      20|     158|       2
---------------------------------------------------------------------------
    1-  105 (138.53/62.56)	.....................................M.PSSeLQ......PL...EVEENASTSeFMPVQVVN.....................................................................................................................................lDNKESVSCQQVLPSA.ASPAKQPLDGPDFESSSCIQVSRN.TPENSSTTIVSS..NHGyDVPKEIINRINDPLPTNILRLP
  106-  201 (141.02/60.88)	DFIPSfSYNIAPQMVSPTAPPE..QSPSDSITGLTAPMSPAS.LQ......PP...VPGKSSGNKpFFSFNVV...................................................................................................................................................PHAnISPA..P..GQQFQHTTATNQSQP.QVGNLPMFMYS.............................
  202-  292 (134.07/54.58)	.........................QPSD.......PEKPAG..............IGSKITGGK.ALPVPFQN..........................................................................................................................................NVDTKAVLVST.SSNNPTCLD.PGI.TSKLARPSFNaSPRMPGIFGSSR..PHG.SLPSR.......PLSSNVAGHP
  303-  359 (30.42/ 6.73)	SFPPS.SYSATPNSVSFNGQPNlyQPPNQYLHPAATP.SPASwLQhgvvhnPPfltYPG......................................................................................................................................................................................................................................
  494-  546 (42.13/12.11)	..........................................................................lmvapspfqygipshtpirptglstpstsvekssfatektilppsdldkqtdslknnevciannvinawmahkteegviyyynsltrvstydkplcfklepdriasqptpvswerlsgtdwtlvrtndgkkyyyDTKNKVSSWQI...........PQEVEELENHKDLDVSKA.SP..VPLHILSSeiDNG...P..IVSNLDKP.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.66|      21|     179|     367|     390|       4
---------------------------------------------------------------------------
  367-  390 (32.11/27.15)	FQygiPSHTPIRPTGLSTPSTSVE
  394-  414 (34.55/19.73)	FA...TEKTILPPSDLDKQTDSLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.29|      28|     545|     463|     492|       5
---------------------------------------------------------------------------
  463-  491 (47.02/39.49)	IAS.QPTPVSWERLSGtDWTLVRTNDGKKY
 1010- 1038 (45.26/26.54)	ISSpKSKPVSKEKMDG.NWKMIKPSSSDNY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04430 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASPRMPGIFGSSRPHGSLPSRPLSSNVAGHPMVPDS
2) IAPQMVSPTAPPEQSPSDSITGLTAPMSPASLQPPVPGKS
3) ISPAPGQQFQHTTATNQSQPQVGNLPMFMYSQPSDPEKPAGIGSKITGGKALPVP
4) SCQQVLPSAASPAKQPLDGPDFESSSCIQVSRNTPENSSTTIVSSNH
5) SDSPKITEISTHSQHAESNKEKLKDPSGDGNLSESTSDSEDTESGPTIEQCMM
262
115
171
35
599
297
154
225
81
651










Molecular Recognition Features






MoRF SequenceStartStop




1) LRYLKI
2) SKEKMDGNWKMIKPSSSDNYHPFRHRGSS
989
1019
994
1047