<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04424

Description RNA polymerase II transcription mediator
SequenceMKSGNMFIELDKLPINRVEAVDDSGIERFPLDVDPEERKVDLIRKLDFSSEVEKYTKRSRNGSDEIAKEKNKKPPGSTSWPWQSLIESMQAAHQELSVIIDIINTVEANDAVTVAGMTKPKPLTNEILSDLSVSTATKLQSIRHLGKYFKQGSKSFEKLVAKETRFYNALIRLQQNWKVKRHRLTISGHSNEGFTIDLMDISSSESNTFPRPFSTSIIRVDRDLNGKLVVQLPLRSFRSLYFRFFDSNSSRRLLHSLRSKMHSITNKFPLDGNNETVVENVNECVKGSHSVLRNIHLSLFEEKVFDFVIHEALASLSGVEIVTLYENFLKLGVGKGASVNLSLMLSDEADPKPIFDDPCEENIDSHTNLLEELDIDREHNTFKETITRFPNAACFQIHLTSTVHEYMSSRAKEGCRDEIGLISDFCMTGAHSIFSQKVLSDLETLASGIPYLRLLTHPTWHSRISSWSLFVKLPQSILNPLNAHKMRSEFNIKVTVTDDCVKVTGIGSPNVIDSFSGNSSFSKSVYSYYDRNLVDLKMSLLLKIACQLIQWLHEEALVLGLIASRDFLTLNFDIAEGSNMKLMAHVDVKDGHCSISWSMVVNENDGKPLTEYSTTKSEGTITFLGYLSLETLYSILMDLVSFCNNPLNLVVSSHPNIFSS
Length660
PositionHead
OrganismZostera marina (Eelgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zosteraceae> Zostera.
Aromaticity0.08
Grand average of hydropathy-0.224
Instability index40.28
Isoelectric point6.05
Molecular weight74424.94
Publications
PubMed=26814964

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04424
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     222.94|      63|     238|     288|     359|       1
---------------------------------------------------------------------------
  288-  352 (97.27/53.79)	SHSVL....RN...IHLSLFE......EKVFDFV..IHEALASLSGV..EIVTLYENFLKLGVGKGASVNLSLMlsDEADPK
  522-  589 (76.00/35.96)	SKSVYsyydRNlvdLKMSLLL......KIACQLIqwLHEE.ALVLGL...IAS..RDFLTLNFDIAEGSNMKLM..AHVDVK
  598-  651 (49.67/23.03)	SMVVN....EN...DGKPLTEysttksEGTITFL..GYLSLETLYSIlmDLVSFCNNPLNLVV...................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.01|      13|     238|      24|      36|       2
---------------------------------------------------------------------------
   24-   36 (24.64/15.95)	SGIERFPLDVDPE
  263-  275 (24.38/15.70)	SITNKFPLDGNNE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     205.59|      77|      92|      54|     145|       3
---------------------------------------------------------------------------
   54-  145 (102.37/123.77)	KYTKR.SRNGSDEIAKEkNKkppgstsWpWQSLI...ESMQAAHQELSV........IIDIINtVEANDAVTVagmtkPKPLTNEIL...SDLSVSTATKL..QSIRHL
  147-  240 (103.22/78.15)	KYFKQgSKSFEKLVAKE.TR.......F.YNALIrlqQNWKVKRHRLTIsghsnegfTIDLMD.ISSSESNTF.....PRPFSTSIIrvdRDLNGKLVVQLplRSFRSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04424 with Med17 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA