<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04423

Description Uncharacterized protein
SequenceMEHQLRNQGPSTQVSVTTQSQSRQLLAQDPKSNISSTTVQGSCSFSPELSSTEGMTQANISSHVENQNKDGMPVITQNSLNNIPVQSISQNMYASSQSQMQERHQRQSIISQNQQVPQNHILYEQELIKQSSLFQSQIPQQQQKQPVLSQSQLQSCQQPLIQMSTGLQSGIQQNQQNPVQQPTSSLNQKHPQSLVRQQQSSQQPNLHLPTSISQKSNVLQANQQMGHQSSLTNIQQNQLLGQHNNLSDVQKLHQHQRLSNQQNGLMNMQQPQQMINQQNISLHQKQQMPQSNVSGIQQQSSLRSQHQSQILGSTISASNMQSQNPNLRSYSNVSGQDIQQTSSVLMQLQDSDDSPDQTSDPSIPEWREDVYQEVLLLKETYYSDINNMHQNLEVRIQQVLEQERLLQSGSAKQELDRLMKFKSSLERFLHILLTPKQNIPFGLKDNIQNLENKIVNMLSNRPRKGFSQGQQKLQHSQGQVGGDFGILQQSSNGSSLKNNVNSLNAKNANPLQCNNLQYQVKSGNQQQKFLMQKKLQQQLIQQRSQQKQSQHEQLQQKQQPNIQLQGSQMQQHHPINEMNELNIRQISSSKPIPFNPSCIGQRQTYNQQEQKIPAPLPISSLKSISILSPQISQHSSAQMDQQSVSSPTVNPSSPVSSNQLIEHEKQFSNISSFSNPGNAGPQQSSPIDQYLSDITPGISVSSFLDDEKNVTERPLEYLIRMVGSSSPNSLASSATDIGSVVHMIDRFAGSAPGNGSRASLGEDLVATTRLRMQSRNLMLQDGSFVTTKMKKHTTAIQLNGMSSVGSVHDSLKRTGIDISEFESTATSRIKRAKMEANHALLEEIRFINQHLIDTSVDIIDEDIDSISSATEAEGTVVKFTYLAVSLSPTLKLQFATSRVLSILPLLLVIPPNYPSCSPVLLEKIPAEISNEPEDLSAKVKSSFSKFLCGLSSPTSLKEMASSWDLCVRKVVLEYAQLSGGGTFSSKYGTWKEISKT
Length996
PositionTail
OrganismZostera marina (Eelgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zosteraceae> Zostera.
Aromaticity0.04
Grand average of hydropathy-0.694
Instability index71.34
Isoelectric point8.44
Molecular weight110947.76
Publications
PubMed=26814964

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04423
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     214.77|      41|      42|     141|     181|       1
---------------------------------------------------------------------------
  104-  136 (35.69/ 6.80)	HQR.....................QSIISQNQ...QVPqnhILY...E.....QE......LIKQS...S...LFQS
  157-  201 (55.74/14.62)	QQP..LI...........QMSTGLQSGIQQNQ...QNP...VQQ....ptsslNQKH...P...QSlvrQ...QQSS
  202-  234 (39.41/ 8.25)	QQP..NL...........HLPTS..................ISQ...K.snvlQANQ...QMGHQS...S...LTNI
  269-  322 (39.43/ 8.25)	QQPqqMInqqnislhqkqQMPQSNVSGIQQ.....QSS...LRS...Q.....HQSQilgSTISAS...N...MQS.
  512-  557 (44.49/10.23)	QCN..NL...........Q.YQ.VKSGNQQQKflmQKK...LQQqliQ.....QRSQ...Q..KQS...QheqLQQK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      53.96|      11|      15|     625|     635|       2
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  625-  635 (20.18/10.13)	SILSPQISQHS
  643-  653 (16.78/ 6.79)	SVSSPTVNPSS
  692-  702 (17.01/ 7.01)	SDITPGISVSS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.64|      16|      16|     756|     771|       3
---------------------------------------------------------------------------
  756-  771 (25.19/18.48)	SRA.SLGEDLVATTRLR
  774-  790 (23.45/16.64)	SRNlMLQDGSFVTTKMK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.35|      42|      56|     338|     393|       4
---------------------------------------------------------------------------
  338-  393 (53.00/63.66)	IQQtssVLMQ...LQDSddSPDQTSDpSIPEWREDV..YQEVLL.........LKETYysdinnmhQNLE
  396-  451 (53.36/29.14)	IQQ...VLEQerlLQSG..SAKQELD.RLMKFKSSLerFLHILLtpkqnipfgLKDNI........QNLE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.56|      12|      16|     235|     246|       6
---------------------------------------------------------------------------
  235-  246 (21.74/10.12)	QQNQLLGQHNNL
  254-  265 (21.82/10.18)	QHQRLSNQQNGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.88|      19|      19|       4|      22|       7
---------------------------------------------------------------------------
    4-   22 (33.12/14.48)	QLRNQGPSTQVSVTTQSQS
   24-   42 (28.06/11.07)	QLLAQDPKSNISSTTVQGS
   82-  100 (27.70/10.82)	NIPVQSISQNMYASSQSQM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.78|      47|      64|     861|     907|      10
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  861-  907 (75.17/48.10)	EDIDS.ISSATEAEGTVVK..FTYLAVSLS.PTLKLQFATSRVLSILPLLL
  922-  972 (67.61/42.55)	EKIPAeISNEPEDLSAKVKssFSKFLCGLSsPTSLKEMASSWDLCVRKVVL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04423 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MEHQLRNQGPSTQVSVTTQSQSRQLLAQDPKSNISSTTVQGSCSFSPELSSTEGMTQANISSHVENQNKDGMPVITQNSLNNI
2) MQKKLQQQLIQQRSQQKQSQHEQLQQKQQPNIQLQGSQMQQHHPINEMNELNIRQISSSKPIPFNPSCIGQRQTYNQQEQKIPA
3) PQISQHSSAQMDQQSVSSPTVNPSSPVSSNQLI
4) STGLQSGIQQNQQNPVQQPTSSLNQKHPQSLVRQQQSSQQPNLHLPTSISQKSNVLQANQQMGHQSSLTNIQQNQLLGQHNNLSDVQKLHQHQRLSNQQNGLMNMQQPQQMINQQNISLHQKQQMPQSNVSGIQQQSSLRSQHQSQILGSTISASNMQSQNPNLRSYSNVSG
5) VQSISQNMYASSQSQMQERHQRQSIISQNQQV
1
531
629
164
85
83
614
661
335
116










Molecular Recognition Features






MoRF SequenceStartStop




NANANA