<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04418
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MLYATFIDMIDIDIDDIILTVIVASNGMRGRLTGCCPTDLVKQVYSTNSSNGSTVLGVSSQFPGCQLRGQSCYVEVTLGCLSGSAEKTVQSTSNPYMCITQYCTKSNPAVTDERRAKKPRLSETFPMLEKTLIFPVETVLVPIFYKACAKASLKRIWLRDSSGTSLSVMPSLWNCSDSNFINYCLGFGGSCDISLADSVLGEFIDSHRQRKYNNRNCSNSSSISSTSSTSNNSDVANTSVARELEADADSLSCRQSGLSLNDQLEKDNHKRASKRSWKEIAGSFDQACNVASGSIIDPYTSNRSLVGFQFDSIWDWDQGRCINVDIVDVVAEYGSFDDFFEDDNFDVILGELPGTEESQTAMFSATNGGETSSSPCLGKNDGPEQTPIPFPNLPLIEEHIQDIGPSNNEFMNQNMESTMDTGQSSITGDSSITNKYDYLKRAEAMMTVIPRYSAVETPFSEFSISIFRTPYVPKSKLVEKPSGLSSYVHSTTHPQLISEEKVEMASKAKMITGDYDTISSYSKYYNFVNGRKNYIKKKSITNEMTLHEDDNLSSLSGITFPSSSTSFQEKKTDDTLETGCLLMSLKTVLGTELECGMYQASMRRIRHTLLFCNQVPKSLVMRTSQGLSIQVTGDQSMMPNMISSGNGIKKKDSIPVRIAGDIDSVPDNSVTAPLGVWRVVAPSKSTKASNMLNVESSPFPKNNAVEDFPVFSRRQPLQELLDAISLLVQQSTSFVDVSLDPCDGDGSYDFLTLEEQIRRGFVCGPSSVHAGCGGVLASCHSVDIAGVDLVNPLSTDVRVSSVISLLHSEVRVAMRAAFGNLEGPLSVIEWCNGHNQSGDTINTGDIHYAECNNTELNDSSSEFIGEAISPTFASNISSLRDGVRIDESSQRRSNQEQEHKISGFRNRPTISMLPLPSLLIGFQDDWLKTSPIILNSWEKEQFEPYALPKPLTYCAVCPDIDFLTFASATFLRQIGIVYESCNLGTHSPYLIGSQLDIASKKSSIPGLVLVDCPQTMKKTGMASTSENVLNDYLISSKKNWDLKSFLVSLANSLKTLKLGSVLSTNQKDGTNVPTLVVYVVCPFPGTTAVLQTLVESCVALGSAVHASEKESRTLLHSQISKDLNSAAPADEASTSNVVMLSGFSIPNLVLQIVSLDLLLRVDMPWKEHFVLKDLAFTIYNKARRVVRSSSNVDVIQSQSTPGRSQSTLMHASSSSPGFWKDCLPPRISNPVIARETEHDSAIRHGVWDNSWQTLRTSGGLNYDSTRLIEKWADNFRCMFEPLFILAEPGSVEQVIPLVGYNNVSSESSNSRSLVDDSSSGYMQTSASSGNNTSPLLDDTDREHKLYSLHCCYGWTEDWRWLICIWTDSKGELLDSQIFPFGGISSRQDTKVLQCLFVQILQQGCQIISSSLYFGSTKLRNIIITRIGCFFELECQEWQRAIYLVGGNEVKKWPVQLRRSVPCGASSTSNGPSLQQQDISLIQERSMSSSSLPSMYNPHPKSSGYMKGTLGQSNYKKAISGSQPMDCSRGLSQLVQSISLIAVSVDHSLHLFIPTDSSSLDGINQNGNSTTGHLESFNSVSSLGEIPSSYMFIPTPSVRYLPPSPSQLPTCLTSESPPLAHLLHSKGSAIPLSTGYIVSKAVPSARKGRTGKTNQEWPSIISVTLIDHYGGNIDNFQEKMARGVNSSSGVKQGISSSGSGRISCLESNTRDCEFEKHLVLESISAELHSLSWMTISPMYPERRTALPFHCDMLLRLRRLLFYADKHLALQSLDK |
Length | 1773 |
Position | Kinase |
Organism | Zostera marina (Eelgrass) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Zosteraceae> Zostera.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.242 |
Instability index | 52.45 |
Isoelectric point | 5.56 |
Molecular weight | 194595.38 |
Publications | PubMed=26814964
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IBA:GO_Central
|
GO - Biological Function | transcription coregulator activity GO:0003712 IBA:GO_Central
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IBA:GO_Central
|
Interaction
Repeat regions
Repeats |
>MDP04418
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 572.31| 186| 204| 342| 545| 1
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342- 545 (299.77/179.41) DDNfdviLGELPG.TEESQTAMFSATNGGETSSSPCLGKN....DGPE.QTPIPFPNLPLIEEHIqdigpsnnEFMNQNMES.TMDTGQS...SITGDSS...........ITNKYDYLKRAEAMMTVIPRYSaVETPfsefsISIFRTPYVPKSKL..VEKPSGLSSYVHSTTHPQLISEEKVEMASKAKMITGDYDTISSYSKY..YNFVNGRKNYIKKKSITNEMT
549- 725 (216.37/106.05) DDN....LSSLSGiTFPSSSTSFQEKKTDDTLETGCLLMSlktvLGTElECGMYQASMRRIRHTL........LFCNQVPKSlVMRTSQGlsiQVTGDQSmmpnmissgngIKKKDSIPVRIAGDIDSVPDNS.VTAP.....LGVWRV..VAPSK...STKASNMLN.VESSPFPKNNAVEDFPVFSRRQPLQELLDAIS............................
988- 1063 (56.17/18.47) .....................................................................................................................................................PYLIGSQLdiASKKSSIPGLV.LVDCPQTM..KKTGMASTSENVLNDY.LISSKKNWdlKSFLVSLANSLKTLKLGSVLS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 355.55| 137| 182| 1251| 1419| 2
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1251- 1356 (104.17/94.12) ..................................................................................WQ.TLRTSGGlNYdstrlIEKWADNFR....CMFEPlfILAEPGSVEQVIPLVGYNNVSSESSNSRSLVDDSSSGYMQTSASSGN......NTSPLldDtdrehklyslhCCYGWTE
1357- 1532 (202.40/143.16) DWRWLICIWTDSKGelLDsqifpfgGISSRQDTKV..LQClFVQILQQGcQIISSSLYFGSTKLRniiitrigcffelecqeWQrAIYLVGG.NE.....VKKWPVQLRrsvpCGASS..TSNGPSLQQQDISLIQERSMSSSSLPSMYNPHPKSSGYMKGTLGQSNykkaisGSQPM..D...........CSRGLSQ
1545- 1598 (48.98/16.27) DHSLHLFIPTDSSS..LD.......GINQNGNSTTghLES.FNSVSSLG.EIPSSYMFIPTPSVR......................................................................................................................................
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 97.66| 29| 41| 174| 203| 4
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174- 203 (49.89/38.30) NCSDSNFINYCLGFGGSCDISlADSVLGEF
216- 244 (47.76/31.28) NCSNSSSISSTSSTSNNSDVA.NTSVAREL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 129.41| 38| 454| 1174| 1246| 7
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26- 64 (64.82/27.11) NGMRGRLTGCCPTDLVkQVYSTNSSNGSTVLGVSSQFPG
1180- 1217 (64.59/82.07) NKARRVVRSSSNVDVI.QSQSTPGRSQSTLMHASSSSPG
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