<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04406

Description Mediator of RNA polymerase II transcription subunit 27
SequenceMEQQKSAVIEGDAPPKQVALAIERLGKASRLFAEIRLGVDRLLEVVIDLSEQETKTALDLIVKGDSSIRCHFQDLLILGKQLEEFGVLNESLRSRGDSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKKRFFSHLQDESSGQTYGSDLSISKKRASREDSESFGEHKNLSDVLFSLQKEASYMNVFTYKRLDWRKIASSLTDVKNIDSLKEKNSLGSVSMNEVAIIELFVPSVFRAFISLHPAGSTNPDSVAFFSPDEEGNHIHPNGKSLFHVFKYIKEHADRALQYFCGVNRNASLSLLLNWICSYRTLYSQSCCGCGRILFMESVRVLLPPVYRSYLQSSSLKFSSFQTPKNEQSSERISAYHIGCYVDERL
Length390
PositionTail
OrganismZostera marina (Eelgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zosteraceae> Zostera.
Aromaticity0.09
Grand average of hydropathy-0.257
Instability index51.23
Isoelectric point8.04
Molecular weight43785.30
Publications
PubMed=26814964

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04406
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.22|      21|      22|     152|     172|       1
---------------------------------------------------------------------------
  152-  172 (36.22/19.40)	QDESSGQTYG.SDLSIS.KKRAS
  175-  197 (28.00/13.68)	DSESFGEHKNlSDVLFSlQKEAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.65|      15|      25|     230|     254|       2
---------------------------------------------------------------------------
  230-  247 (22.04/38.22)	SL...GSVSMNEVAiieLFVP
  255-  272 (23.61/ 9.32)	SLhpaGSTNPDSVA...FFSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04406 with Med27 domain of Kingdom Viridiplantae
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