<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04402

Description U-box domain-containing protein 35
SequenceMDFETDDFDGVANVAVGVNENRNTKYAVKWALQKFIPEGINLIKLLYVRPRLTLAQSQMRDDILDAHRRDVEWKTNMMLFPFKQMCSDKQVDVETRIIEADDIPSAISQGVINLGINKLVIGSSSRSALAKKFKADKSKSTRIMEAVPNFCTVFVASKGKLSYVRHSTSYCGEENMQDDRSSTSISSSCRLSQDSSAYSEATDTDSSSNINNLYASNLHNQRNQALRSMNQKFIDTNSRPNSNANTYSGSSYHSARLSLGSEEDNVGFNSTGVEIQRGIPRDTGHRNIQSNYRQFKNSNNASASVDLTISSAPEHPADANFELERMKLELRHLQGLYEKAQSETVDASKKVDELSILREEDSVKLEKLYLSEMKVQELVKEENKARETAEKEADFVKKCTKKEVLDRKNMEDCAVREAEEKHRIQRVLVSCEQQQYKIFDWEEIISATSSFSSNLLIGSGAYGKVYKGKMHHTNVAIKVLESNEVQTKQFQRELETLGRIRHPHLLLLVGACPDHGCLVYEYMENGNLSDRLKCKNDTEPLKWFHRYRIAWEIASALFFLHNTKPEAIIHRDLKPANILLDRNFVGKIGDVGLSTLLPTDPSMSNMHRNTSPVGTFFYIDPEYQRTGVISPKSDIYSLGMVILQLLTSKSPRGLAYTMETAIDDGDLDVILDSKAGEWPVDETQKLAQLALSCLELTSKDRPDLQTQILPLLENLKKVADAAQDGLIHSATNIPPNHFICPILQEVMHEPCVASDGYTYDRKAIETWLSINDKSPLTNLQLPNKNLIPNHSLLSAIKDWNPAI
Length803
PositionTail
OrganismZostera marina (Eelgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zosteraceae> Zostera.
Aromaticity0.07
Grand average of hydropathy-0.502
Instability index40.06
Isoelectric point6.02
Molecular weight90499.25
Publications
PubMed=26814964

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04402
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.59|      31|     197|       4|      36|       1
---------------------------------------------------------------------------
    4-   36 (49.41/43.07)	ETDDFDGVANV....AVGVNENRNTkyAVKWALQKFI
  200-  234 (48.18/34.17)	EATDTDSSSNInnlyASNLHNQRNQ..ALRSMNQKFI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.75|      18|      45|      83|     104|       2
---------------------------------------------------------------------------
   83-  104 (23.99/30.42)	KQMCSDKQVDveTRIIEAddIP
  131-  148 (31.76/22.04)	KKFKADKSKS..TRIMEA..VP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.77|      21|      45|     235|     255|       3
---------------------------------------------------------------------------
  235-  255 (38.55/23.54)	DTNSRP.NSNANTYSGSSYHSA
  282-  303 (34.22/20.09)	DTGHRNiQSNYRQFKNSNNASA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     156.03|      48|      51|     426|     474|       4
---------------------------------------------------------------------------
  426-  474 (79.90/67.07)	RVLVSCEQQQyKIFDWE.EIISATSSFSSNLLIGS.GAYGKVYKGKMHHTN
  478-  527 (76.13/57.76)	KVLESNEVQT.KQFQRElETLGRIRHPHLLLLVGAcPDHGCLVYEYMENGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.32|      19|     114|      44|      62|       5
---------------------------------------------------------------------------
   44-   62 (33.64/23.75)	KLLYVRPRLTL.AQSQMRDD
  160-  179 (30.69/21.04)	KLSYVRHSTSYcGEENMQDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.47|      40|      46|     323|     366|       6
---------------------------------------------------------------------------
  323-  366 (52.94/39.93)	LERMKLE..LRHLQGLYEKAQSEtVDASKKVDELSILreeDSVKLE
  370-  411 (59.53/33.42)	LSEMKVQelVKEENKARETAEKE.ADFVKKCTKKEVL...DRKNME
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04402 with Med32 domain of Kingdom Viridiplantae
Unable to open file!