<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04373
Description |
Mediator of RNA polymerase II transcription subunit 5 (Fragment) |
Sequence | MLAACLAPRPFPPPLLAQYIQAALGNADLARPGYVASIVASRVPALALPAAEVAFSAINQTLASAPSQPSYASDTPAETAQAVELALNSLLPLILSSPTSALETIRYLSYFLSHLPHRLTKEKVDAAQIESCAKRVGIAIEAVANVGSKDAPVLAKLRQDLEALRRKLTPRGRRRVPSSVDLDEFDEIEGLRIPYGDVALLVSRMLSNPFLPTQQLQSSLLALIRYRTAQSTFRKSTPQKALVLLLVEVLGGLIQTLQDAKRADVVLESLLFGKVPHVLKSLTTANGLDKLPEALAAALRLMQGRLAKATSDGRKDMDSSVPSVFSQFVAACCQSDLLLPDIGASLARDVDVSELQPVMIEDYQHRLAAGSIDDLKQVLDEAVHSYAPQQTIASAVASLFAAKAQSADLAGLADLCDALAESKDAMSVIFLHVEPRELLRPVRQVLDSFDTTQENSDDVNPIERYGSLVLFVQLVVSRFKLLDNLAYHLDSSSSFVATWLPSASAVYAVSTMTDDERNAVSGWIGALFGEGISDDLMHATNPRTLLRVAPTILKQSLKARQAGIVDMDSLRDALSYFLQELLRFTLPGVLKWLIAEIEQTPPSSQQNSMLDLLQVLVFSDALPPAVLELVALDLARLLLSPAFASNVPSSVDIARLRKTIAPYRPLPPAIQATVVDEHAAFGATSKPILSGAPSTEGEEVVATAIPPLYDSLRLSLRASKTPVSFFSCTFLPPIFALLANTPTIATAAYSRLERYAAAVLAAPDSNGRPLIVALIWHLTPEELAEWDLRMLPAGTADGLVAGETERMQVNLLGDAIAGAFVLVTGEGEADSSSSSTQTTSAAPDEL |
Length | 846 |
Position | Tail |
Organism | Rhodosporidium toruloides (Yeast) (Rhodotorula gracilis) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina>
Microbotryomycetes> Sporidiobolales> Sporidiobolaceae> Rhodotorula.
|
Aromaticity | 0.06 |
Grand average of hydropathy | 0.184 |
Instability index | 49.05 |
Isoelectric point | 5.01 |
Molecular weight | 90660.02 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP04373
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 404.69| 106| 107| 373| 479| 1
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366- 472 (161.58/90.54) RLAAGSI.........................DDLKQVL..DEAVHSYAPQQTIASAVASL.....FAAKAQSA.D.LAGLADLCDALAESKDAM..SVIFLH.VEPRELLRPVRQVL.DSFDTTQEN...SDDVNPIErYGSLVLFV
473- 578 (138.01/73.11) QLVVSRF......................kllDNLAYHL..DSSSSFVATWLPSASAV........YAVSTMTD.DeRNAVSGWIGALFG..EGI..SDDLMHaTNPRTLLRVAPTILkQSLKARQAG...IVDMDSLR..DALSYFL
579- 714 (105.10/53.90) QELL.RFtlpgvlkwliaeieqtppssqqnsmLDLLQVLvfSDALPP.AVLELVALDLARLllspaFASNVPSSvD.IARLRKTIAPYRPLPPAIqaTVVDEH.AAFGATSKP...IL.SGAPSTEGEevvATAIPPL..YDSLRL..
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 62.29| 20| 21| 9| 28| 2
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9- 28 (37.17/20.11) RP.FPPPLLAQYIQA.ALGNAD
31- 52 (25.12/11.20) RPgYVASIVASRVPAlALPAAE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 62.50| 22| 22| 243| 264| 3
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243- 264 (33.34/19.83) VLL...LVEVLGGLIQTLQDAKRAD
265- 289 (29.16/16.48) VVLeslLFGKVPHVLKSLTTANGLD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 44.00| 14| 22| 78| 92| 4
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78- 92 (18.05/17.23) ETAQAVELALnSLLP
103- 116 (25.95/18.88) ETIRYLSYFL.SHLP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 50.86| 14| 142| 167| 180| 5
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167- 180 (25.82/17.66) KLTPRGRRRVPSSV
308- 321 (25.04/16.90) KATSDGRKDMDSSV
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