<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04371

Description BY PROTMAP: gi|342320136|gb|EGU12079.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]
SequenceMAGRPGLLASSSSSSNDLDPSNPAQSLADDSAELAERAAVKLFPVFYPPRDGMDEDQMGEQVVKAGYAAKPSVQAETFSAHQHIYDKLKTSDILGNLSRLVAAVQAKADERLPSYGPSTFRLPSRITLTDSKREAWFSDLASPSVPLSKLSRSGFWGVEIQSLSKTRPLQTAISLYTSEFTTVVSEFVRKQLHETILPPCSSAPSPAAPASSVPTMLATARQRSSSFSKPAGSGAGTPALGMAGAAATAPNGLELLDEERRKSWEDKFEYTLRLVSSLYHESLLDRPQFLRFLTSLLTPPSPVPPTPSGATSILGYLTFVLVLVEEYWADLGENDPALGRFGRGCLERLAELDHAPPSSLLDHVRSTLHALLRSAFLANPDSFVPLLPSPLLPASSSSAAVGERLRGILLESGKSGEDELDREARETIESDLEELSVRRGALRAALALHLESAAEDEAEKEKEEDKASDQAVLNAIERLDEIEFPVRIAEVHKAIFVDTSVPPLSSSKPSPSSSSSSVPPLSLAHALPLFFTYSTATPSRPFQAPHRRYAVSRLIAIELERLTSGQKRRVTRSAGGEARVPSVEDAFVKWVDERFATPSAEGGTQTLRELVRLLLEELLRAGVVSYGAYLQRMIARGETERPLSSSSASLSEEGGAESIHLWMLRTVAMEAAAGGGGGARRRVAIGGQEGVERALRTEERIRLARTELERLVFSPASAPLSTSSTCATLLDTVRALTEEGSQWVLTRDIVPDGLSSRLEPETGKLRIGREEMAVVAAVYEVAQDWSGLLQLFLVLLQLSPPPAVVLHILDIVKGHLDVWISLDSLADLGTAVLGAFDSLKAVEGPHRRRLLSFLQSLAAAGYLPAQAKETIDTEMRNLSLPSPASTLSASNPKTPPLPSPLPEIQTLLVDSSEVAIAQLASTLWFRYHSHPDWASATLESVLHILPQLDSVDPAIAVLQTVHDRICAGIGPAVSRWAGSLSAIVAAAVLGGEGGARVAALFGRLVVEGVLSAPFVLDKVVLPVRRALLSQLTAATEPAAASIDPNVFRALQCSHAILSSVIALPRSREDRDARETDEADQTPPSTPATLASQQRLHSRRIALGTRAALTAVAQAISLLVIEQEVANTLAVEDLARPASDFLVQLGALPELQTLFTRDPKALMDGMLRIPALTTIPRIETFRPKLLLGLLAMLKDGGASTPANLVSTEDWDVFLSRLTLWRLAVSKVEVEASLERLESDAAISAADKAAAMHTLSEHFLDRICGGTGQSFLGEQIVRCYDGGAASEELVSVAFDRLADALDALAQSAGSPDHDKQSFRTLSTVAALLDTLQQGGQLAARDSAIERLLTAIKACICLERLGRTAKDGAVEEASAEPVILFVVHLVSVALRCAKLPSPRAIAELFRDCLAPLARLSATLSKGTIRDFQLSTLLLDACSHIIYTFPDLSPLVRVPTLQTLLNPCLTNPPLAIDFIPDATFSRLTHLFGPYAPSSLVPNPWELLDHTDPSSASTALVRKSSQPPLQLINAGPIDLAAFRAKIIETIPAVTALDAVSTISTGSSGTNATAASHFERGRQTNFDFETPCTTLSIAARDHRRTTAVTRMLASRIDAGSVAAAASAAAAAQAAAIAQAAGVSANARKRPASGSVESTGRQAPAPPAATASSAGATGRGSKRKSTTEVVVLDSDDEAEAPSKPKKAKASASGTTGRTGGKTTASKVPASKTTKRKK
Length1726
PositionKinase
OrganismRhodosporidium toruloides (Yeast) (Rhodotorula gracilis)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Microbotryomycetes> Sporidiobolales> Sporidiobolaceae> Rhodotorula.
Aromaticity0.05
Grand average of hydropathy-0.032
Instability index53.05
Isoelectric point5.87
Molecular weight183639.59
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04371
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     481.90|     133|     193|     134|     267|       2
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  134-  219 (121.70/57.30)	.............................................................................................................................EAWFSDLASPSVPLSKLSRSGFWGVEIQSLSKTRP......LQ.......TAISLYTSEFTTVVSEFVRKQLHETILPPCSSA.P...................SPAAPASSVPTM.LAT
  220-  267 (35.65/14.82)	ARQRSSSFSKPAGSGAGTPALGMAgAAATAPNGLELL....................DEERRKSWEDK.................................................................................................................................................................................
  325-  400 (79.67/34.71)	....................................................................feytlrlvsslyheslldrpqflrfltslltppspvpptpsgatsilgyltfvlvlvEEYWADLGENDPALGRFGRGCLE..RLAELDHAPP......SSlldhvrsTLHALLRSAFLANPDSFV.........P...LL.P...................SPLLPASSSS....AA
  401-  525 (126.99/60.36)	VGERLRGILLESGK.SGEDELDRE.ARETIESDLEELsvrrgalraalalhlesaaeDEAEKEKEEDK............................................................................................asdqavLN.......AIERLDEIEFPVRIAEVHKAIFVDTSVPPLSSSkP...................SPSSSSSSVPPLsLAH
  591-  664 (53.94/21.09)	VDER...FATPSAEG.GTQTL.....RELVRLLLEEL..lragvvsygaylqrmiarGETER....................................................................PLSSSSASLSE..EGGAESIHLWML..........................................................................................
 1408- 1493 (63.96/26.26)	..................................................................................................................................PLARLSATLS...KGTIRDFQLSTL...........LL.......DACSHIIYTFPD.LSPLVRVPTLQTLLNPCLTN.PplaidfipdatfsrlthlfGPYAPSSLVP......
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     590.15|     224|     244|     846|    1089|       3
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  681-  766 (36.07/10.07)	RRvAIGGQ...EGVERALRTEERIRLartELERLVFSPASAplSTSSTCATLLDTV.RALteEGSQWVLTRDI.VPDGLSSR..........LEPETGKLR..................................................................................................................................................................................................................................................................................................................................
  846-  996 (211.27/115.17)	.....................................................................................................igreemavvaavyevaqdwsgllqlflvllqlspppavvlhildivkghldvwisldsladlgtavlgafdslkavegpHRRRL.LSFLQSLAAAgylpAQAKE..TIDTEMRNL....SLPSPASTLSASNPKTPPL......P.................SPLPEIQTLLV.DSS..................................................EVAIAQLASTLWFRYHSHPDWASATLESVLHILPQLDSvDPAI......AVLQTV..H..DRICAG.IGPAVSRWAGSLSAIVAAAVLGGEGGAR
  997- 1286 (240.13/148.26)	VA.ALFGRlvvEGVLSAPFVLDKVVL...PVRRALLSQLTA..ATEPAAASIDPNVfRAL..QCSHAILSSVIaLPRSREDRdaretdeadqTPPSTPATL.........................................................................asqqrlHSRRIaLGTRAALTAV....AQAISllVIEQEVANTlaveDLARPASDFLVQ......L........................GALPELQTLFTrDPKalmdgmlripalttiprietfrpklllgllamlkdggastpanlvstedwDVFLSRL..TLW.RL......AVSKVE.VEASLERLES.DAAIsaadkaAAMHTLseHflDRICGG.TGQSF......LGEQIVRCYDGGAASEE
 1504- 1637 (102.67/43.52)	..............................................................................................................................................................................................................................PSSASTALVRKSSQPPLqlinagPidlaafrakiietipavTALDAVSTIST.GSS..................................................GTN.ATAASH..FERGRQTNFDFETPCTTLSIAAR.DH.RRTT......AVTRML..A..SRIDAGsVAAAASAAAAAQAAAIAQAA.GVSANAR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.88|      15|      17|    1692|    1706|       4
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 1655- 1668 (19.94/ 8.53)	.PPAATASSAGATGR
 1692- 1706 (27.36/14.95)	KPKKAKASASGTTGR
 1710- 1724 (23.59/11.69)	KTTASKVPASKTTKR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.16|      26|      29|    1296|    1324|       5
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 1296- 1324 (36.30/27.60)	ADALDALAQSAGspdHDKQSFRTLSTVAA
 1326- 1351 (40.86/22.46)	LDTLQQGGQLAA...RDSAIERLLTAIKA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.50|      10|      30|    1161|    1170|       6
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 1161- 1170 (19.24/11.44)	LMDGMLRIPA
 1192- 1201 (18.26/10.43)	LKDGGASTPA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04371 with Med12 domain of Kingdom Fungi
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