<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04369

Description Uncharacterized protein
SequenceMSANFYLSSHANHHLHPRYALLTARLDDLRHANEQELAWIEIWSASAMQKICKRLNLRQQVVATAVVYFRRFYLRNSYCETDPALVAAACCYVAAKAEETPVHVKSAVGEAKVVFNDMGLVSFTSDHHRLAEMEFYLLEELDFHLIIFHPYRALIQLCGRDGGANAAGEEGRLNKDKMLEMDDTTLQMSWCVSVRSFSQFVKLTIFGMCAVVSEHRFIINDTFRSSLCLVHPPHLIAVAAIYLAFALQPPASAAAQILPPSASASSGRSADASRPGGPATRTRRQSQDASNNPSSALTTTTSSGPKSSSSAAPDPITFLASLAIDQSLVLEIVQEIVSLYELWAQLESGSATGSGSSSSSRGGSSSSSMRGQSGSTNASPDEKVVAILRRMQEGRMRELRDERGKQVQAQQAQAAVAGRRGGGLTYGPNTSSRLPRRLEQHGDRANSLPPPPPAVIPLVLRSNVFSSDSRLRYSCTVNTLMTRSRRNSPSQQSTDDKAILGRKKRLLEDDFRSAGSPFLGRVSPSSERGSARGELPVRRLG
Length541
PositionKinase
OrganismRhodosporidium toruloides (Yeast) (Rhodotorula gracilis)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Microbotryomycetes> Sporidiobolales> Sporidiobolaceae> Rhodotorula.
Aromaticity0.06
Grand average of hydropathy-0.300
Instability index64.22
Isoelectric point9.34
Molecular weight58965.98
Publications
PubMed=29521624

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04369
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.44|      29|      69|     272|     314|       1
---------------------------------------------------------------------------
  272-  314 (39.84/38.37)	ASRPGGPATrtrrqSQDASnnpssalttTTSSGPKSSSS.........AAPD
  344-  381 (43.60/18.29)	AQLESGSAT.....GSGSS.........SSSRGGSSSSSmrgqsgstnASPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.14|      16|      16|     200|     215|       3
---------------------------------------------------------------------------
  200-  215 (28.79/17.86)	FVKLTIF..GMCAVVSEH
  217-  234 (26.35/15.82)	FIINDTFrsSLCLVHPPH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04369 with CycC domain of Kingdom Fungi
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