<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04363

Description Bm9010
SequenceMNYVDQQQFIMQQGQRMQNPRMISVPTTVTPQHLHRQQRYGMAMMQPGQQPVQIASGQYVQNPQMQPRLMTMSDALSRLPPEVQQMAQQQINAETSAEKKRQVALGFIQGRVRLTQQYPGQGTMNSGGMMISVGLNQQVGMAQGNTQMVRMGTVQSGPVPYPAQNVSLQTGMGQMGPAQVSVQRMPGHYMTSNMNAPQNIQYQSQDPGNVQNYNPQQQITLTQPSSVGPTLQQSSSLHHKGPNSVPTAIYTQHHPENATATHSTISSKGDKSSDEPLYSQKLELLKPYHEHIKRLLERNRLDGQAPKSKFERLLEIMENRRKVELKLLEKLVVSVRNLIERDSLCFPLIDALRLESGDTPKTPLPDPWDDFHQYAIKVPEKVMNLVKEEKTKSKESKGVIPVKRIKKEEDSDERIAVICQDGSRLELSQEASDQLRPHNYRFDPEFIPISDDCTEIQVFIENDILLVPPLRLVIPLNYPESKASIWRDRWSYGGVNLIDINTQFDKRLNMAVNCRSITEIINAWKLASLHVLKIGSSSAST
Length541
PositionTail
OrganismBrugia malayi (Filarial nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Brugia.
Aromaticity0.05
Grand average of hydropathy-0.623
Instability index48.48
Isoelectric point8.91
Molecular weight61134.06
Publications
PubMed=17885136

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04363
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     155.02|      29|      29|     137|     165|       1
---------------------------------------------------------------------------
   14-   43 (25.62/ 8.66)	GQrM.QNPRMISVPTTVT....P....QH..........lhrqQRY..GMA.
   65-   97 (25.30/ 8.47)	MQ.P.RLMTMSDALS.RL....P.PEVQQ...........maqQQInaETSA
   98-  143 (29.01/10.78)	EK.K.RQVALGFIQ.GRVrltqQ.YPGQGtmnsggmmisvglnQQV..GMAQ
  144-  174 (46.63/21.77)	GN.T.QMVRMGTVQSGPV....P.YPAQN............vsLQT..GMGQ
  195-  223 (28.46/10.44)	.N.ApQNIQYQSQDPGNV....QnYNPQ...............QQI..TLTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.26|      18|      49|     325|     342|       2
---------------------------------------------------------------------------
  282-  299 (30.90/20.65)	LELLKPYHEHIKRLLERN
  325-  342 (27.36/17.57)	LKLLEKLVVSVRNLIERD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04363 with Med15 domain of Kingdom Metazoa
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