<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04348

Description "Bm13695, isoform a"
SequenceMTSTEEYVQDATFASLPRTVRGMPLGLHASPDGQKLIYCNGNSVYIRSIQNPKECEIYTEHANPTTVAKYSPSGFYIASGDQSGKIRIWDATQPSHILKAEYPILSGPIRDIAWSDDSKRIAVVGEGRERFGHVFLFDTGTSNGNLSGQSRTMSSIDFRPARPYRLVSGSEDNTVALFEGPPFKFLTLFHEHTRFVYCVRYNADSTLFASSGADGKVILYEGTTGQKEGELMDDQCKGVAHAGSVFALCWSPDGQRIATASGDKTIKIWDVSSKKLEKTFVIGKNVDDQQLSIIWTKVFLAGVSLSGFINILDLESGSVSKVLKGHNKPITALTVCSEKALAFTADFEGNITRWCLNSGDSERLLPAVHSSQVSDMCLSPNGNLVSIGWDDSIAFTSFPGSLDNVQSNKVKLSSQPRQVALGSSGKIAVVACQKSVTIFSDGKQMVLQNIEYEASCVAVAPDSRLTAVGSQDGKVHIYELNGNQMKEIKTISQTGSITSLSWSPNGSFLVATDANRKVIPYSVDNDYKCVTEKDWTFHSARVSCSAWSPDSRFVATGGIDTNVIVWDLKHSGEHPIIIKGAHTMSPINGIDWLGSNRIITVGQDSVLKIWTVNV
Length614
PositionTail
OrganismBrugia malayi (Filarial nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Brugia.
Aromaticity0.08
Grand average of hydropathy-0.183
Instability index34.32
Isoelectric point6.29
Molecular weight66830.62
Publications
PubMed=17885136

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04348
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     237.29|      40|      40|     426|     465|       2
---------------------------------------------------------------------------
   99-  125 (24.49/12.37)	KAEYPI...L.....S.G..............PIRdiA..W..SDDS.....kR.IAV..VG..........
  228-  269 (52.05/35.96)	EGELM.ddqCKGVAHA.G..............SVF..AlcW..SPDGQ.....R.IAT..ASGDKT.IKIW.
  441-  479 (45.38/30.25)	DGKQMV...LQNIEYE.A..............SCV..A..V..APDSRL.........taVGSQDGkVHIYE
  481-  522 (44.09/29.15)	NGNQMK..eIKTISQT.G..............SIT..S..LswSPNGSF.....lVAT..DANRK..VIPYS
  526-  567 (41.29/26.75)	DYK...............cvtekdwtfhsarvSCS..A..W..SPDSRF......VAT..GGIDTN.VIVWD
  571-  610 (30.00/17.09)	SGEHPI..iIKG.AHTmS..............PIN..GidW........lgsnR.IIT..VGQDSV.LKIW.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.15|      13|      40|     168|     180|       3
---------------------------------------------------------------------------
  168-  180 (23.02/16.49)	SGSEDNTVALFEG
  210-  222 (23.13/16.60)	SSGADGKVILYEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.04|      40|      40|     291|     330|       4
---------------------------------------------------------------------------
  291-  325 (48.66/24.92)	................LSIIWTKVFLAGVSLSGFINILD.LESGSVSKVLKG
  326-  367 (60.32/32.48)	HNKPI.........taLTVCSEKALAFTADFEGNITRWC.LNSGDSERLLPA
  369-  410 (29.06/12.22)	HSSQVsdmclspngnlVSIGWD....DSIAFTSFPGSLDnVQSNKV......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.54|      25|     339|      69|      95|       6
---------------------------------------------------------------------------
   69-   95 (39.08/35.97)	KYSPSGFYIASGdQSGKIRIWdATQPS
  411-  435 (43.46/28.88)	KLSSQPRQVALG.SSGKIAVV.ACQKS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04348 with Med16 domain of Kingdom Metazoa
Unable to open file!