<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04346

Description BMA-MDT-29
SequenceMYGHQSIPRSVSAGQLNAMMSHPGMVITSQQMINTPQGVMVSQAGYPQGMINTAQPPQMMPSQTHISQQMINTHMGVVQGLNQQGHMNVQHQQMQQMQQVQMAPQQAYIQQQGMSHPNFVNGQARSPAVGPGPQGISQQGTPGRPSSTSGPPSNNPQTPLNVMSTLNPSSQQVSTPATPQQAPSSVQSTTTQDNISTPTIVPPDPVSLARNLLLRDLRYSLQEWSKTAAEVVRPSTLRQDGSSSAMHNPMSVNPQSVNPQSVNPQSVNPLSANPSSVKSLDEPKSVENLEKKILSPSEAYINAFDYFLGTCDQIENDIMVVQEAQKQSVKFDKMFAGELKIVGEMANVNYSQYAQGYVESTARVRNAITRTLKNLNATMERMNAAKIVQKDIEEKMAM
Length398
PositionTail
OrganismBrugia malayi (Filarial nematode worm)
KingdomMetazoa
Lineage
Aromaticity0.04
Grand average of hydropathy-0.566
Instability index64.49
Isoelectric point7.87
Molecular weight43352.46
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04346
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.55|      17|      17|      32|      48|       1
---------------------------------------------------------------------------
   37-   56 (25.16/ 9.17)	QGVMVSQAGY..PQgMINTaqP
   57-   74 (26.30/ 9.95)	PQMMPSQTHI..SQqMINT..H
   99-  117 (22.09/ 7.10)	QVQMAPQQAYiqQQ.GMSH..P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.33|      16|      21|     248|     263|       2
---------------------------------------------------------------------------
  150-  172 (21.64/ 7.98)	GPPSNNPQTplnvmstL....NPSSQQ
  248-  263 (32.45/15.93)	NPMSVNPQS.......V....NPQSVN
  268-  287 (21.24/ 7.69)	NPLSANPSS.......VksldEPKSVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.35|      13|      21|     173|     185|       3
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  136-  147 (22.13/ 7.51)	ISQQGTPGR.PSS
  173-  185 (24.51/ 8.99)	VSTPATPQQAPSS
  195-  207 (22.71/ 7.86)	ISTPTIVPPDPVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.18|      22|      25|     288|     309|       4
---------------------------------------------------------------------------
  288-  309 (38.49/26.01)	NLEKKILSPSEAYINA..FD.YFLG
  313-  337 (29.68/18.55)	QIENDIMVVQEAQKQSvkFDkMFAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04346 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAEVVRPSTLRQDGSSSAMHNPMSVNPQSVNPQSVNPQSVNPLSANPSSVKSLDEPKSVEN
2) QAGYPQGMINTAQPPQMMPSQTHISQQMINTHMGVVQGLNQQGHMNVQHQQMQQMQQVQMAPQQAYIQQQGMSHPNFVNGQARSPAVGPGPQGISQQGTPGRPSSTSGPPSNNPQTPLNVMSTLNPSSQQVSTPATPQQAPSSVQSTTTQDNISTPTIVPPDPVSLA
228
43
288
209










Molecular Recognition Features






MoRF SequenceStartStop




1) RNLLL
210
214