<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04340

Description Uncharacterized protein
SequenceNDIKNLQRIPGQIGLIHYSMLSQTGQSHHPLIRREDIDPEYEKAVKKLKENEKKIKILLERQQMDGKISDAKERIEKLERIIQFKEKASLNYINRFINATDAKIKDENLCKPVIDAFDHIVKAGDKYKNFRIPHYDPFYCIKEKLGVPDYIKYARPDDDTDPTPYYLRETNCDDVKEKIIERSGEKEKSADVSKINVGERELEILEEIDEKSKLVIGEDSKEHLVILCGNERYLVLSEIITKDLKSCGGKFKVDPESIPISDHCREINIIITFDTIGVPPLHLLVPIDYPKDFCTIINPNFNEVDRDVLLCRLISKVEQALPCLPINRDIQNIVNTWKKLSMTCN
Length345
PositionTail
OrganismStrongyloides venezuelensis (Threadworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Strongyloididae> Strongyloides.
Aromaticity0.06
Grand average of hydropathy-0.537
Instability index32.92
Isoelectric point5.88
Molecular weight39946.56
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04340
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      57.99|      15|      17|     185|     199|       1
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  168-  181 (17.52/ 8.19)	..RETNCDDVKEKIIE
  185-  199 (22.71/12.51)	E.KEKSADVSKINVGE
  203-  218 (17.76/ 8.40)	EiLEEIDEKSKLVIGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.88|      12|      18|     228|     240|       4
---------------------------------------------------------------------------
  228-  240 (17.62/15.22)	CGNeRYLVLSEII
  247-  258 (23.26/14.87)	CGG.KFKVDPESI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.48|      15|      20|     293|     308|       5
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  293-  308 (24.06/20.58)	FCTIIN......PNFnEVDRDV
  310-  330 (22.43/13.25)	LCRLISkveqalPCL.PINRDI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04340 with Med15 domain of Kingdom Metazoa
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