<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04322

Description Uncharacterized protein
SequenceMPEQQDIVFKIFNIVKCAALGTIKNSEFASIIKSAIDNKTLTRKEMHQICGLVITAFFDEDNYGLKYLNPLESLINLCVISGDIVIGAILKTKFEKLDKKKIGNFFVLFKFVDFLVSKKKPTSSKGNDVMKVAEEILSIFNWYVELSTWDESETFTNYVAKRLFALLQNRYNCILLHATSKKSSECKKLLESRAVVLETKYPEISSYIRENVLIFKSTLERPYSSGLHHDFESISSMMTVYATLRTLESARDIAEAVYMASKNLQFTKIKMLYDMFKGVLYNFANNKTRREGRLFLGFAIIKFPKIIKSLVCDLRVLDEIDIVATLAKIATESKLLCIVDFQCKYSFWELFISGLEREGVISESNTEQALYFRSLDYKENKETYENGLFLKPNINFPLNECINAWEHLIKLPLDNLPTVLKGLKHVIGIEKGEDNFTGILMTMWFKEELGNLSRLFSKINYLCQCKNDSLDEDSKAIRLELFDTTLILLFTIYFHFPDFTIEEFIGLPKKGEESENEESFLFYIWNTKIDKKINIPNDPEERTFEFDWDAPPIALIENPSDDVENELDQIINAITDGENNKNVKKSTEEDEKKVVHENYEKMDDTENLDLIGNDIKRDDVNEGGETKDDKENEGGEVKMERLKCPLKLENDEEIDSQTRLIVDNLYKDKPFWDDEIDFAQAIKFIPKIAFTLCEDLRMKLHDKSNILDAFWCFRSMPSLVICLFQCLETGNNTHARNEVLDAIQIVLKKGKFDDDTVYNKWHFVYKIIGKKINDLVKIKAFQQPGTHFLISGFRKTLPVLEYKEIPHPHIIADAMIYTIKHNFVLPEALRIFDHYISVKGITSWCDSCFQELLRLETPDELDLASSLLLSIAFCRPTECFNEITKHIVDSILNADTWYMATHQPGRSALARLLVRSMCCMIWVSENRKHKEIYEKQLSFNEEDPNMNTLEIVFSRFYKETLSGHLKPTISFIIEFIYELAIAPQTPELSRLYSFVSRKFIFNLARLDPYSVTIDLYYRIFNFDDNGDNGLLQFATLHRFKGIL
Length1043
PositionTail
OrganismStrongyloides venezuelensis (Threadworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Strongyloididae> Strongyloides.
Aromaticity0.11
Grand average of hydropathy-0.210
Instability index35.68
Isoelectric point5.36
Molecular weight120991.91
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04322
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.84|      48|     203|      82|     150|       1
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   93-  142 (76.20/82.76)	KFEKLDKKKIGNFFVLFKFVDFLVSKKKPTSSKGNDvmKVAEEILSIFNW
  478-  525 (84.63/43.96)	RLELFDTTLILLFTIYFHFPDFTIEEFIGLPKKGEE..SENEESFLFYIW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.31|      46|     381|     296|     343|       2
---------------------------------------------------------------------------
  296-  343 (75.20/40.91)	LGFA.IIKF.PKIIKSLVCDLR..VLDEIDIVATLAKI.ATESKLLCIvdFQC
  676-  726 (67.11/31.48)	IDFAqAIKFiPKIAFTLCEDLRmkLHDKSNILDAFWCFrSMPSLVICL..FQC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.84|      30|     202|     549|     584|       4
---------------------------------------------------------------------------
  549-  580 (45.41/48.08)	DAPPIaLIEN..PSDDVENeLDQIINAI.TDGENN
  590-  622 (44.43/25.95)	DEKKV.VHENyeKMDDTEN.LDLIGNDIkRDDVNE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.43|      38|     424|     372|     409|       6
---------------------------------------------------------------------------
  372-  409 (70.01/38.06)	FRS....LDYKE..NKETYENGLFLKPNINFPLNECINAWEHLI
  793-  836 (58.43/30.68)	FRKtlpvLEYKEipHPHIIADAMIYTIKHNFVLPEALRIFDHYI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04322 with Med24 domain of Kingdom Metazoa
Unable to open file!