<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04292

Description Uncharacterized protein
SequenceMPSISEKDILDIKRRLQQMIDGQKEFVDAPELIAALESMDITIDILKRTLIGITVNELRRKSGNEALNKRIKSLVKKWKSQMETNVIKKSGNTPPPQQNVTTIKKPINNSSKPQPPPQTFTANVKIHKDDYRNKVIGMFISAFNVAELPEGTLDPEDLAVRIEEEHFKLHTSTNDKYKAAIRSKIFNLRDKKNPDLRANVLTGVISPEKFSTMTSEDMASDSMKKQREKYTQEAIREHQMSVAEGTPTDMFKCGKCRKYNCTYTQVQTRSADEPMTTFVFCRECGNRWKFC
Length291
PositionUnknown
OrganismStrongyloides stercoralis (Threadworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Strongyloididae> Strongyloides.
Aromaticity0.06
Grand average of hydropathy-0.718
Instability index46.87
Isoelectric point9.29
Molecular weight33323.96
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04292
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.13|      18|      18|      87|     104|       1
---------------------------------------------------------------------------
   60-   76 (19.56/ 8.59)	.RKSGNEALNKRIKSLVK
   87-  104 (32.05/18.10)	IKKSGNTPPPQQNVTTIK
  107-  121 (21.51/10.08)	INNSSKPQPPPQTFT...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.83|      17|      18|     165|     181|       2
---------------------------------------------------------------------------
  165-  181 (29.14/16.31)	EHFKLHTSTNDKYKAAI
  184-  200 (26.69/14.45)	KIFNLRDKKNPDLRANV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.03|      24|      26|     229|     253|       3
---------------------------------------------------------------------------
  229-  253 (38.23/21.76)	KYTQEAIREHQMSVAEGTPTDMFkC
  258-  281 (43.79/21.34)	KYNCTYTQVQTRSADEPMTTFVF.C
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04292 with Med26 domain of Kingdom Metazoa
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