<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04281

Description Uncharacterized protein
SequenceMSNQPGGYGQPQNIPQQQMMFNQQHLMGRQMSQMGVQRQIYSQDPGMPQQSQMQMHFSQQQQMQQMSQQQMGQMPQLQPQQQQQPSMGHQQQMQMGMQQHLSGQQMGIQQQQQQQMVQQQAVQQHMQQTQQMSQQQMHSSQTQMGSILGASLGPLSQQHMQMQQPRSPMISSLGPQQLTPGGGPGSQAPGSTLAVASAGGPTSVGPMSVQPHTPMNPSSQQAIAQPSSVQPGPASVAPGTPASNQAHQYYDFKPPPQAPTMGEPADLYLQDPVAHSKQLIMKDLRFCIVDLNRRAGEALKDLKAGNVPSNSNEYLKAMDNLFAVCDEIEGNLVLVCETQKQMSKMEKIFDKDAMKSGEQHPNYSDSKARNVGSEDDSTAYFSAVNTYIDQTRQLQAAFDRAFSHVGRTLETIRRRQNMSSNAEQVVKMEE
Length430
PositionTail
OrganismAngiostrongylus cantonensis (Rat lungworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Metastrongyloidea> Angiostrongylidae> Angiostrongylus.
Aromaticity0.04
Grand average of hydropathy-0.855
Instability index72.65
Isoelectric point6.45
Molecular weight47672.07
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04281
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     144.78|      28|      28|      46|      73|       1
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    9-   36 (39.74/ 6.75)	GQPQNiPQQQMMFNQQHLMgRQMS..QM.GV
   46-   73 (60.81/14.46)	GMPQQ.SQMQMHFSQQQQM.QQMSQQQM.GQ
   76-  104 (44.23/ 8.40)	QLQPQ.QQQQPSMGHQQQM.QMGMQQHLsGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.50|      22|      22|     133|     154|       2
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  133-  154 (42.67/20.31)	SQQ..QMHSSQTQMGSILG.......ASLGP
  156-  175 (28.88/10.77)	SQQhmQMQQPRSPMIS...........SLGP
  179-  206 (29.94/11.50)	TPG..GGPGSQAP.GSTLAvasaggpTSVGP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.29|      21|      25|     209|     233|       3
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  200-  231 (25.69/20.73)	GPtsvgpmsVQPHTPmnpSSQQAiAQPSSVQP
  232-  254 (38.60/17.44)	GP.....asVAPGTP...ASNQA.HQYYDFKP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04281 with Med29 domain of Kingdom Metazoa
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