<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04276

Description Uncharacterized protein
SequenceMGSSNAQASQQYERVLQQCNNCLVLLRQLRNRVMRLHSHLFQSLPQSKEMWHAYFRRVERLDKELRDCFDNLENYAKGLANQLPQIDPLNRLRAVFQQSNPQVLEIYRSDVFQEEQLDVQALETVEAMIDCENWNEGNFQTYTYLGEFLRLQRRRPSSVVPRPLSCSYWSTGMSPHAQFESAFAQFQKELLKNKTGIFPTFLERTAVGSIVELKYGVLFEKQIVFTQKMLMIENAGVVEQMLFVAPHEEWSFYTDLGEKRVDLSKTSQYVVYQKLSVQANLHLMQTINTQEIRWTAQTLHQLSSAFGKFQHVFEATCRNCKKVMKDFLPPLIFDFRNLKNALHETCR
Length347
PositionTail
OrganismAngiostrongylus cantonensis (Rat lungworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Metastrongyloidea> Angiostrongylidae> Angiostrongylus.
Aromaticity0.11
Grand average of hydropathy-0.418
Instability index45.97
Isoelectric point8.35
Molecular weight40729.17
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04276
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     211.62|      54|     110|     111|     165|       1
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  111-  164 (94.29/59.88)	VFQEEQLDVQALETVEAMIDCENWNEGNFQTYTYLGEFLRLQR...RRPSS.VVPRPL
  166-  202 (38.71/21.56)	....................CSYWSTGMSPHAQFESAFAQFQKellKNKTG.IFPTFL
  224-  275 (78.62/48.24)	VFTQKMLMIENAGVVEQMLFVAPHEEWSF..YTDLGE.KRVDL...SKTSQyVVYQKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.20|      28|      53|      25|      52|       2
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   25-   52 (50.58/33.31)	LLRQLRNRVMRLHSH...LFQSLPQSKEMWH
   61-   85 (26.24/13.90)	LDKELRDCFDNLENYakgLANQLPQ......
   87-  108 (30.39/17.20)	......DPLNRLRAV...FQQSNPQVLEIYR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04276 with Med27 domain of Kingdom Metazoa
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