<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04268

Description Uncharacterized protein
SequenceLVFMCFRPPSFSDNVGKLARQVDWKKLIGSDAVYDNPNSLINETDDEEVQNIVEERVVPEAGPWHNVAKFLHESLQQLNVLLDNLAIMRATDYMKPLTVLDPIHAESGPMLAETAAVSKATQWVWKRKALLEAMSVLELAQRFRNVEVEDEVHQQKSQFFSELTKMREYWRVRKTGDHIYGDLGYHIFGSKYNPRELFDISRVSFPPGTSFDSNVSVLQVTVPRDLTRRSTLSVSIVKDDHMNRDLFASLDDHQFEYMKVDSNKIESIQWTNALTWAQETLICKDIFNTLCSDAVQMRNRLSTIRDGVLLVSLYNDYLLRVELKYHPFKEGDLPEEGCPYLNRALREMMVAQECTRWMRPQMFISLPLTNLSEALDARGPRAFTAREIESRAYRPQFLLEKLIIIASHYSLVRMTRDTLEEFMSTTRDPQVYSCCTYCLVVELVHQCSHVNLLVEFYLMGL
Length461
PositionHead
OrganismAngiostrongylus cantonensis (Rat lungworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Metastrongyloidea> Angiostrongylidae> Angiostrongylus.
Aromaticity0.10
Grand average of hydropathy-0.261
Instability index42.66
Isoelectric point5.56
Molecular weight53415.59
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04268
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     192.31|      56|     268|      59|     115|       2
---------------------------------------------------------------------------
   13-   45 (34.00/15.15)	.............................DNVGkLARQVDW.KKLIGSDAVYDNPNSLINETD
   60-  115 (96.03/68.07)	EAGPWHNVA.KFLH.....ESLQQLNVLLDNLA.IMRATDYMKPLTVLDPIHAESGPMLAETA
  132-  184 (62.28/43.55)	EAMSVLELAqRFRNvevedEVHQQKSQFFSELT.KMR..EYWRVRKTGDHIYGDLG.......
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04268 with Med17 domain of Kingdom Metazoa
Unable to open file!