<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04248

Description Uncharacterized protein
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
Length1454
PositionTail
OrganismGeotrichum candidum (Oospora lactis) (Dipodascus geotrichum)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Dipodascaceae> Geotrichum.
Aromaticity0.04
Grand average of hydropathy-1.291
Instability index89.30
Isoelectric point9.88
Molecular weight159130.42
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04248
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.59|      18|      18|     624|     641|       1
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  123-  140 (43.78/ 7.43)	QQQQQQQQQQQQQQQQQQ
  840-  857 (41.81/ 6.64)	QQQQQQQQQQQLQPQQQQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|    1284.90|     232|     849|     110|     369|       3
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  112-  369 (401.57/61.57)	..RQR........QQQQQIGqqqqqqqqqqqqqqqqqqqQQQQHQQ.QQQQQQQQQQQQQQQQQ..................QQQQQQQQQQQQQQQRSNMINPNNQFQQNANsgnnidgfnQQNQIRQLQQ...EQQQQQ...................P.........STI...K...KPEMYQNNNAQ..FNMGNQQQQPLQQPSQHSIQQH..PSQQ.QFNANNLGNMSREQQILLMKMAEAKQNQ..LNSNNNANGNNNTNNP.NLA...MGNTSSAPN.....VSPNLNPSR....N.ETANKTANGNPVPSKEAE.....FRKQ..LQKQL.................LSSTIPPQILQMMP
  399-  563 (259.40/32.70)	KQAYE........RHYAFIV.....................HLHRQ.QQVQRQQQLQLQQQQQQ..................QQQQQQQQQQQQQQQ...LPQP.............................................................................................TQTQQQQQQVPLH...QP..PSQQpKFRSPQVPNQGLSQQV......PGRNNQ..RIINNNANDGLN.NSP.QFAaqnITNENTLYN.....IG.NQQP.R....F.EGANPRL..SPVMSQQ........RPQpvGNKHN.................MINIQPPQ......
  564-  781 (226.98/27.10)	............................................QQ.QQNQPSSQPSLSQFQPP..................GPPSIPSQQPQQQPQQS...QP....QQ.............QSSLLPQQQglpPQQAAQpvqpvqpvqpvqpvqppqpP.........QPV...Q...PVQPVQ..........SVQPVQPPQPPPQQPPQQPqlPQQP.Q.........SQKQRGLLGNLPPDQLEQ..L.RNLKIQAEKNIVLP.DL...................TDKLSPEQ....KlQTSNILKMTLPSYQKIDQyliiyFMLN..LNKQLvvklfqikaifrqqweaLSN...GRFL.TEP
  800-  942 (120.31/ 8.99)	EQFQKkkmgekklQEQQ......................HQLQGQQlQQQQQQHQFQQQQLQ..qqqqqqqqqqqlqpqqqqQQHLQPQQQQQQAPNTS...QPSKPLQQPPS.............VQQGPQ....AQKPA...................P.........SPVpakK...APPKKQGKQTQ..AQIKKQQQLAAQLKLQQEQQQQ..QQQQ.Q..................................................................................................................................................
  997- 1218 (276.64/35.57)	.......................................QQQQQQQ.QQQQQQQQQQQQQQQQQ..................QLQQQQLQQQQQQLQQQQL.....QQQQKQQ.........QQQQQQQLQK....QNQQH...................PlnetndsknVTI...SkdaKPLSQSENSLQsnFTAGNSS....GDNQAHS........EQ.KL.......LSQPQQPTPPPAAPAKKKRasVSKGKAAMASNNVNSPkSFA...SYPDSLSPSgvpkyAKPGLTADQlklpN.SRKRKPSSATPTPTSPED.....IRTP...QQPV.................PSSQTPTGMGSSTP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.32|      14|      16|    1346|    1359|       4
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 1346- 1359 (24.12/17.70)	RNAFG.SLDTVKSSN
 1363- 1377 (18.20/11.51)	RASVSpSLANVNSAN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.15|      16|      16|    1272|    1287|       5
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 1272- 1287 (25.02/21.05)	EVESVIGKRSAIGKDS
 1289- 1304 (26.14/22.42)	KIKLPMTKPNAVTKPS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04248 with Med15 domain of Kingdom Fungi
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