Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MSDDEFRISIEPQVKDELLSFDDDSLPLGQIIKRITQERGSFTELTEESLLHEIEAEQMLDTKDDDELFHEDLSMDNQAGSNNDETSGEASAGVSTAAGASAGSAPTNGSSNDKALNAINNGGSNSASDGAFNDEEDDDDDLSFDQVRHELLSLVSVAHNESALSQDFVSLLMSCLRPAAGTTSMSPHLKQFIPVGSLNADNSKPSGIDDDPLVAAGWKLQALDHSASLISRAAKRLQSEAEKEELYWENVLSIVSFGEVLFKIRKGDMRGLGIKYGYGDAGSQYYDKGVATLRRKADGTMSFQTGLNKRTKVVKVNLYSVVNGERVFEGSSKSLEILPERSVQNEIINARNLLFEEELFFEMAKEARGLVSHRVRIVNGKIIVKLFDEILEIEFVNPEPTADDDDKNSMLGESANETNDNNTTTNEDNKSNMAEDVEMGDAPPALKISRRASLISTTFHILLCYAHRKNLETKASVPKPLNTKEKKSKSALYILRPLIAHILHHKIIARTHKTIELISQNIVNLQVTSESVEAAAEEMQGSTSGYLGRLAVHPMSKIVIKQDPVPGAAKHASHVEVLTGSPLQSYLPLYEAYAYVKDGDKDREVSKGTFWDLEELEDWIRWVLTEEF |
Length | 628 |
Position | Head |
Organism | Geotrichum candidum (Oospora lactis) (Dipodascus geotrichum) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Dipodascaceae> Geotrichum. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.447 |
Instability index | 45.14 |
Isoelectric point | 4.80 |
Molecular weight | 69270.45 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP04232 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 48.04| 15| 16| 38| 53| 1 --------------------------------------------------------------------------- 38- 53 (21.05/17.34) ERGSFTELTEEsLLHE 57- 71 (26.98/17.24) EQMLDTKDDDE.LFHE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 276.21| 95| 173| 294| 402| 3 --------------------------------------------------------------------------- 294- 402 (126.57/164.90) RRKADGTMSFQTGLNKRTKVVKVNLYSV......VNGERVFEGSSKSLEILPersvQNeIInarNLLFEEELFFEMAKEARGLVSHRVrivnGKIIVKLFDEILeIEfVNPEPTA 468- 568 (149.64/134.96) RKNLETKASVPKPLNTKEKKSKSALYILrpliahILHHKIIARTHKTIELIS....QN.IV...NLQVTSESVEAAAEEMQGSTSGYL....GRLAVHPMSKIV.IK.QDPVPGA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 60.53| 18| 132| 3| 21| 4 --------------------------------------------------------------------------- 3- 21 (27.65/20.79) DDEFRISIEpQVKDELLSF 137- 154 (32.88/19.36) DDDDDLSFD.QVRHELLSL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 68.03| 21| 335| 82| 106| 5 --------------------------------------------------------------------------- 82- 102 (33.38/24.36) NNDETSGEASAGVSTAAGASA 111- 131 (34.65/15.04) SNDKALNAINNGGSNSASDGA --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) KDDDELFHEDL 2) LGQIIKRITQ 3) MSDDEFRISIEPQVKDELLSF 4) YLPLYEA | 63 28 1 586 | 73 37 21 592 |
© 2021 Shailesh Lab
Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab