<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04232

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMSDDEFRISIEPQVKDELLSFDDDSLPLGQIIKRITQERGSFTELTEESLLHEIEAEQMLDTKDDDELFHEDLSMDNQAGSNNDETSGEASAGVSTAAGASAGSAPTNGSSNDKALNAINNGGSNSASDGAFNDEEDDDDDLSFDQVRHELLSLVSVAHNESALSQDFVSLLMSCLRPAAGTTSMSPHLKQFIPVGSLNADNSKPSGIDDDPLVAAGWKLQALDHSASLISRAAKRLQSEAEKEELYWENVLSIVSFGEVLFKIRKGDMRGLGIKYGYGDAGSQYYDKGVATLRRKADGTMSFQTGLNKRTKVVKVNLYSVVNGERVFEGSSKSLEILPERSVQNEIINARNLLFEEELFFEMAKEARGLVSHRVRIVNGKIIVKLFDEILEIEFVNPEPTADDDDKNSMLGESANETNDNNTTTNEDNKSNMAEDVEMGDAPPALKISRRASLISTTFHILLCYAHRKNLETKASVPKPLNTKEKKSKSALYILRPLIAHILHHKIIARTHKTIELISQNIVNLQVTSESVEAAAEEMQGSTSGYLGRLAVHPMSKIVIKQDPVPGAAKHASHVEVLTGSPLQSYLPLYEAYAYVKDGDKDREVSKGTFWDLEELEDWIRWVLTEEF
Length628
PositionHead
OrganismGeotrichum candidum (Oospora lactis) (Dipodascus geotrichum)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Dipodascaceae> Geotrichum.
Aromaticity0.06
Grand average of hydropathy-0.447
Instability index45.14
Isoelectric point4.80
Molecular weight69270.45
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04232
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.04|      15|      16|      38|      53|       1
---------------------------------------------------------------------------
   38-   53 (21.05/17.34)	ERGSFTELTEEsLLHE
   57-   71 (26.98/17.24)	EQMLDTKDDDE.LFHE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     276.21|      95|     173|     294|     402|       3
---------------------------------------------------------------------------
  294-  402 (126.57/164.90)	RRKADGTMSFQTGLNKRTKVVKVNLYSV......VNGERVFEGSSKSLEILPersvQNeIInarNLLFEEELFFEMAKEARGLVSHRVrivnGKIIVKLFDEILeIEfVNPEPTA
  468-  568 (149.64/134.96)	RKNLETKASVPKPLNTKEKKSKSALYILrpliahILHHKIIARTHKTIELIS....QN.IV...NLQVTSESVEAAAEEMQGSTSGYL....GRLAVHPMSKIV.IK.QDPVPGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.53|      18|     132|       3|      21|       4
---------------------------------------------------------------------------
    3-   21 (27.65/20.79)	DDEFRISIEpQVKDELLSF
  137-  154 (32.88/19.36)	DDDDDLSFD.QVRHELLSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.03|      21|     335|      82|     106|       5
---------------------------------------------------------------------------
   82-  102 (33.38/24.36)	NNDETSGEASAGVSTAAGASA
  111-  131 (34.65/15.04)	SNDKALNAINNGGSNSASDGA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04232 with Med17 domain of Kingdom Fungi
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