<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04202

Description Uncharacterized protein
SequenceMKQTPPVPPVIPGAPKSTDQASVISKSPPEKPVSPPPGTKETPSVPPVVPAAPKPTGQASVISNIPSAKPISPPPGTTQTPSTPPVPPGTAQTTAKLSTAKVSSSVRPNPVQSGTKQKPDVPTDAPRPSSPSPNITKDQPPVVPSTLSTKPGSQETVSRKQSGSIGPKLETTDVPQQTVNQVTNTIAPTVNGTPTVVPVVAPIPIPKPKPSVPPQPPAPPKQEDDHKKDDGKKDDDKDDDEKDDGNKKGDDGDDNKPPHINPPPVIVSPPKVNPPPKIGPPKIGPPKIGPPKIDPPKIGPPKIDPPKIGPPKIDPPKIGPPKIGPPKIGPPKIDPPKVNPPPKVNPPPKDNPPPKVNPPPKDNPPPKVNPPPKDNPPPKDNPPPKVNPPPKASTTSQASTTSQASTMSCPSAVPSGDPKNGNGKNKDCPARRKLCSQECAACRSEEVPRPPGLTKRDIERLEKSSISESDSGYPGHLAKRRMGTPADYNNDLKNFFFNELKVAALVPKGFWIDPGAAMPRNQPSVLVAELGKQKFNAGIINLRGCTSVLVISSAGMWWAHFWEAPGFRYQSLMAGYRFNEEIFKKNVLDVLDAGCSYRTVNNDRVVTTRTTASVRCFVGGTRENPKRFDPVYAPVAFIFTPEDYEKAGQPLYAPEVQRIRDKLHEILGPGTPITTITHKTVDRLGDSPSFQLPTGAYLPYGKALLQYDPREEERDCRWWAGAKVYAEENPTPYHRSLWPARPNQLMTPAAQKRAAPDLAGLPASCSLPVKSKTSKSPTKTTSKPKSTKVASTLIKSVKTTGKPESTKQPSTTTQKPKTTHPKTTKAPTSTSKSEPKPATTTSREPPPKEEESREQKEEKKKEEEEKKKEEEEKKKEEEKKKKEEEKKKEEEEKKKEEEEKKKEEEKKKEEEKKKEEEKKKEDKKEDKKEELNAVCNAFFFRGRGETLITVSSIKGWKGGDEFRSKLEDKCGEIKHWGFKDDTARFNIKDVGRVSCVSKAVEAAGGPRTTCRAPIGA
Length1016
PositionTail
OrganismCoccidioides immitis RMSCC 2394
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Onygenales> Onygenales incertae sedis> Coccidioides.
Aromaticity0.04
Grand average of hydropathy-1.035
Instability index58.96
Isoelectric point9.43
Molecular weight110384.15
Publications
PubMed=20516208

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
ATPase activity	GO:0016887	IEA:InterPro
DNA binding	GO:0003677	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04202
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     147.46|      17|      17|     357|     373|       1
---------------------------------------------------------------------------
  261-  277 (30.81/ 6.50)	NPPPVIVSPPKVNPPPK
  339-  355 (36.48/ 9.49)	NPPPKVNPPPKDNPPPK
  357-  373 (40.08/11.38)	NPPPKDNPPPKVNPPPK
  375-  391 (40.08/11.38)	NPPPKDNPPPKVNPPPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     285.04|      39|      39|       5|      43|       2
---------------------------------------------------------------------------
    5-   43 (78.57/23.37)	PPV.PPVI...PGAPKSTDQ...ASVISKSPPEKPVSPP...PGTKETP
   46-   81 (67.15/18.73)	PPV....V...PAAPKPTGQ...ASVISNIPSAKPISPP...PGTTQTP
   84-  119 (47.48/10.74)	PPV.P......PGTAQTTAKlstAKVSSSVRP.NPVQS.....GTKQKP
  141-  175 (40.47/ 7.90)	PVV.PSTLstkPGS.....Q...ETVSRKQSG..SIGPK...LETTDVP
  281-  316 (51.37/12.32)	PKIgPPKI....GPPK.IDP...PKI...GPP.K.IDPPkigPPKIDPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     114.95|      17|      17|     862|     878|       3
---------------------------------------------------------------------------
  842-  858 (25.65/ 8.03)	SREPPPKEEESREQKEE
  862-  878 (30.14/10.74)	EEEEKKKEEEEKKKEEE
  882-  898 (30.63/11.03)	KEEEKKKEEEEKKKEEE
  902-  918 (28.53/ 9.77)	KEEEKKKEEEKKKEEEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.34|      13|      18|     775|     792|       4
---------------------------------------------------------------------------
  775-  788 (20.94/ 7.53)	KSpTKTTSKPKSTK
  795-  807 (23.40/ 8.55)	KS.VKTTGKPESTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.77|      14|      18|     222|     237|       5
---------------------------------------------------------------------------
  222-  237 (23.43/18.93)	QEDDHKK.DDGkkDDDK
  242-  256 (23.35/12.10)	KDDGNKKgDDG..DDNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.17|      18|      18|     617|     634|       6
---------------------------------------------------------------------------
  617-  634 (34.67/19.70)	FVGGTRENPKRFDPVYAP
  637-  654 (34.50/19.57)	FIFTPEDYEKAGQPLYAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.41|      13|      18|     809|     824|       7
---------------------------------------------------------------------------
  809-  824 (20.62/15.45)	P.STTTQKPKtthPKTT
  827-  840 (20.79/ 7.03)	PtSTSKSEPK...PATT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.00|      15|      18|     954|     971|       9
---------------------------------------------------------------------------
  954-  968 (28.00/25.20)	KGWKGGDEF.RSKLED
  974-  989 (25.00/10.79)	KHWGFKDDTaRFNIKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.48|      17|      18|     659|     675|      13
---------------------------------------------------------------------------
  659-  675 (30.49/19.18)	IRDKLHEILG..PGTPITT
  676-  694 (25.99/15.04)	ITHKTVDRLGdsPSFQLPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.10|      20|      42|     535|     555|      14
---------------------------------------------------------------------------
  497-  509 (21.14/ 9.11)	F..N....ELK..VAALV..PKG
  510-  531 (30.54/16.20)	FwiDPGAAMPRNQPSVLV.AELG
  535-  555 (30.42/20.66)	F..NAGIINLRGCTSVLViSSAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04202 with Med5 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CAACRSEEVPRPPGLTKRDIERLEKSSISESDSGYPGHLAKRRMGT
2) MKQTPPVPPVIPGAPKSTDQASVISKSPPEKPVSPPPGTKETPSVPPVVPAAPKPTGQASVISNIPSAKPISPPPGTTQTPSTPPVPPGTAQTTAKLSTAKVSSSVRPNPVQSGTKQKPDVPTDAPRPSSPSPNITKDQPPVVPSTLSTKPGSQETVSRKQSGSIGPKLETTDVPQQTVNQVTNTIAPTVNGTPTVVPVVAPIPIPKPKPSVPPQPPAPPKQEDDHKKDDGKKDDDKDDDEKDDGNKKGDDGDDNKPPHINPPPVIVSPPKVNPPPKIGPPKIGPPKIGPPKIDPPKIGPPKIDPPKIGPPKIDPPKIGPPKIGPPKIGPPKIDPPKVNPPPKVNPPPKDNPPPKVNPPPKDNPPPKVNPPPKDNPPPKDNPPPKVNPPPKASTTSQASTTSQASTMSCPSAVPSGDPKNGNGKNKDCPARR
3) PTPYHRSLWPARPNQLMTPAAQKRAAPDLAGLPASCSLPVKSKTSKSPTKTTSKPKSTKVASTLIKSVKTTGKPESTKQPSTTTQKPKTTHPKTTKAPTSTSKSEPKPATTTSREPPPKEEESREQKEEKKKEEEEKKKEEEEKKKEEEKKKKEEEKKKEEEEKKKEEEEKKKEEEKKKEEEKKKEEEKKKEDKKEDK
439
1
730
484
432
927










Molecular Recognition Features






MoRF SequenceStartStop




1) KIGPPKIGPPKIDPPKIGPPKIDPPKIGPPKIDPPKIGPPKIGPPKIGPP
282
331