<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04141

Description Uncharacterized protein
SequenceMSPPRRRSARLASASTPKPKKVSQLSSLTERDETPEEVESTSRDGVVASPHPQPATPASSALKPPMSEMHPSKVHPTAIGSSETWLGFRDIKSANVARGKSAMNPQATPSRLSGVPSTSFTFNVTSPAGETGLSTDAQRMMADLREEAAKIKADLVAKRELEKLDEQVNGRKIARAKGKSGRFSAAHMEEFKKMDSIEGHASAFRAQPGRFTPVKKSLKRTSSKANLEDTPKSTLHRSPSKNNLQSTPSQAVSGLKRTSSKANLDEHIEKQPLGTTPSKLRAFAPQPQPSPSPVKRVRQQIEDDASSRRPTSRDGSSLPRPTSSSNASASLARSSSTLTSSTSPGKATAARTGLPKISQPVLTKSPSKASLSGLTKSTTKSDLGELTKSPSKPALGGMAKPAATHDLATLSRTVELKRRIVSPSRFERVKSILRGGKSPAQPAKSAIPQPFAGVSQTPGPRILDKPLPAVPFTTPRRKLFKRVDFTPDSKDTPSKSRGEVSYPNLDAILSRMNEPESHGAPREIKSPLPASPNKREEKASEVPTVPGAFTFRSDRTARFGTGSPAGFCSSPGQLSVRQVRASITPVEEMPGSFPETADLPRATHTSKTPVKSMTAGIKHGLTNEKRARTNTEPFVLNKEGSTPAKLVFEGVPHGLPNEKRARTHVEPSHPNKENKSPVKILTGVAHGLANKKRARATEDDEPDVDQEGADRGGKRRKAESAPQPRILGTPKLARSTPIPSPQKVSAGTPSPPESPSYRSSLRATGENSSVTKHDRNQQRDATDAIDLPDSTIYVSINDPLGEPAFKPSPTKPIPRWMQMLPGNRRQYYPDASRQSTPVSPSRVSSTSTQQLGPLPERARTSSSISTVCPQKILNPASTPPSLSPRVSSLARTSSGGSITDFHPRTVEDHMKRHTPSSWVSHEPLKRPSSRMAYIQGHQRTVTEVSTSSAYATPPEFSFEEHNEIATLPCRPQPGLAGTMPNRHVAFDELPPQLTRTRPPLSAPAVPSSHKHDTVLPTARTPPPLSSEPIIVASRLTAHSSITPLSTIDFHQSRALLVILATIEAQNHLQRIGIKDRQLPAANKSTAATMAPMENNPQELLEQQLKDTIQDLYQIMLQITMYTTTPTHSSHTALTSSLQTLSASLQAVHTTAVAGAPPTPDGVPPNAQDQLGMPPGVPLHDPARHVTPGALPNIPPELVQYVENGRNPDIYSREFVELVRRGNQLMRGKMGAFAQLRDVLAGEMRSAMPEVAEDVARVVEMTSPTLSASLQAVHTTAVAGAPPTPDGVPPNAQDQLGMPPGVPLHDPARHVTPGALPNIPPELVQYVENGRNPDIYTREFVELVRRGNQLMRGKMGAFAQLRDVLAGEMRSAMPEVAEDVARVVEMTSPVKREGA
Length1394
PositionMiddle
OrganismVerticillium longisporum
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Glomerellales> Plectosphaerellaceae> Verticillium.
Aromaticity0.03
Grand average of hydropathy-0.656
Instability index63.46
Isoelectric point10.02
Molecular weight150064.86
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04141
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     850.46|     124|     124|    1140|    1263|       1
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  421-  503 (94.84/27.62)	VSPSrFERVKSILR.GGKS...P...AQ...P...........................AKSAIPQPfAG...V....S.QTPGP.RILDKPLPA....VP......FTTPR............RK.....LFKRvDFTPDSKDTPSKSRG..................................................EVSYP
  505-  616 (98.43/28.91)	LDAI.LSRMNEPES.HGAPreiK...SP..LPasP.......................NKREE..KA.SE...V....P........TVPGAFTF..............RSD............RT...A............RFGT....GSPAGFcsspGQLsvRQVRASitpveEMPGSFPETA.DLPRathtsktpVKSMTAG
  617-  730 (111.06/33.46)	IKHG.LTN.EKRAR.TNTE...PfvlNKEGST..P.......................AKLVFEGVP.HG...L....PNEKRARtHVEP.SHPNkenkSP.VKILTGVAHGlankkraratedDE...PDVDQ.....EGADRG.........................G.....KRRKA..ESAPQ.PR........I..LGTP
  732-  834 (51.75/12.12)	LARS.TPIPSPQKVsAGTP...S...PPES.P..SyrsslratgenssvtkhdrnqqrDATDAIDLP.DStiyVsindPLGEPA...FKPS..PT....KPiPRWMQMLPGN............RRqyyPDA.SR.Q.....................................................................
 1140- 1263 (247.42/82.53)	LSAS.LQAVHTTAV.AGAP...P...TPDGVP..P.......................NAQDQLGMP.PG...V....PLHDPAR.HVTPGALPN....IP.PELVQYVENG............RN...PDIYSR.EFVELVRRGNQLMRGKMGAF....AQL..RDVLAG.....EMRSAMPEVAEDVAR........VVEMTSP
 1265- 1388 (246.96/82.36)	LSAS.LQAVHTTAV.AGAP...P...TPDGVP..P.......................NAQDQLGMP.PG...V....PLHDPAR.HVTPGALPN....IP.PELVQYVENG............RN...PDIYTR.EFVELVRRGNQLMRGKMGAF....AQL..RDVLAG.....EMRSAMPEVAEDVAR........VVEMTSP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     121.09|      30|      35|     212|     241|       2
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  212-  231 (25.86/ 6.97)	......................TPVK..KSLKRTSSKANL.EDTP
  232-  269 (36.11/13.29)	KSTLHRSPSK.......nnlqsTPSQavSGLKRTSSKANLdEHIE
  270-  305 (34.36/12.21)	KQPLGTTPSK....lrafapqpQPSP..SPVKRV..RQQI.EDDA
  306-  344 (24.76/ 6.29)	SS...RRPTSrdgsslprptssSNAS..ASLARSSSTLTS.STSP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     113.97|      23|      23|     987|    1009|       3
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  914-  944 (25.71/ 7.04)	TPSSW............VSHEPLKR.PssrmAYIQG....HqrtvTEV
  953-  989 (24.32/ 6.22)	PPEFSfeehneiatlpcRPQPGL.A.G....TMPNR....H.vafDEL
  990- 1014 (38.70/14.66)	PPQLT............RTRPPLSA.P....AVPSS....H..khDTV
 1015- 1041 (25.24/ 6.76)	LPT.A............RTPPPLSSeP....IIVASrltaH....SSI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.34|      24|      31|     835|     864|       4
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   15-   38 (35.44/11.45)	ST.PKPKKV.....SQLSSLTERDETPEEV
  835-  864 (33.90/22.43)	STpVSPSRVsststQQLGPLPERARTSSSI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.06|      22|      23|     362|     383|       5
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  362-  383 (37.85/16.20)	LTKSPSKASLSGLTKSTTKSDL
  386-  407 (41.20/18.24)	LTKSPSKPALGGMAKPAATHDL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.58|      32|      33|      67|      99|       6
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   67-   99 (52.03/33.52)	SEMHPSKVHPTAIGSSETWLGFrDIKSANVARG
  101-  132 (55.55/31.53)	SAMNPQATPSRLSGVPSTSFTF.NVTSPAGETG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.55|      21|      27|     160|     183|       7
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  160-  183 (27.39/26.85)	ELEKLDEqVNGRKIA.RAkgKSGRF
  190-  211 (35.16/21.06)	EFKKMDS.IEGHASAfRA..QPGRF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04141 with Med10 domain of Kingdom Fungi
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