<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04127

Description Mediator of RNA polymerase II transcription subunit 13
SequenceMDTSQYGTNIFLIKGISSIAYQLYEPAPEQAQAFALIAPAIEKSLRDAGRVANFDSSRRALWHFHIPRQDATQPTAHTEEGGALDHLLDVAGFNLVLTDEGSFEPGHLFKSRPVGQGQTAANTPTHPAFNGSVPDATLRNASSFDNTNTATPSSSDPEGKPTPITSSDGKISITVKIAYEQFISAIISTVSSPICRRLAAIPLNHCTILLNSKVIRQGESKNASGTETAVLGTFRIYLTTTGTLVISFSLVLSEGLISMHEVPGTGQAALSSQVLAAPFGVLGSYMGLANGALPYADTIGQTPDTRLWRPRPEPDAKSSQWREICTSMLKGWGLSGHTLQNCTWVALQLSPRRPVDLRAEGRGTPVRNSSPPMIFSWPSILCFRKRSVDPQANQSERTDIALASKEAADSLTEAKTWFQSDTEREESIVQRRKAREAAASAKEVQAQAPAAPQPTDQFPMDPRRAANAAAASAMYPTPPDAVQNPLGIFTAPAADVVTSSPGPPSSVAAPVDGDAPMVNAVVMADTEGDSWEQTDTKRDRGDSTFEGDDNLFGDMGPDMFGDTDITDADFSFFDEDDDNNPLDLNMSAPDTTMTSLPTTTPEPVSLQADILPPTIDDPPEETTPKTEAPIFTKPELRHARSTLNDETRGRPTSDNSKALSNKREPSPFDPATVFKKVRASLGRLNNQSLGSSPTVTARKGSVFDSIEFDPVLPLASKKYEQGGRFACRWTPTHSDTSLSLKKPPTTDYLRRHSKSHRKPFRTDNTNARIRSITDGLENSSLQASPDKIEELSSDADDMSLESDVDESPDLMEEPTSPFKASTKRLNLEDDMVSHVTSLRDVESVVEDSDPSLALELPRIARFEVPEVAVAKYFDDPEPLLSQLSLQDDDIITVAQILTEQAISGSLCLRDAQSATFNSPVAPETRRQLASLSRTLSLVLQQAIPAALGDSTQCQFRDLIEASDVPLLGPPSRAQPRPVPARDPNAEPPKPNYLFQIPPPHLEIKRLDSKLSVLPSTISFWETLGLGPSQGAKNITAACVFPNLNGLSDFATTFLGRIRNTYEFLKLGGFDIVNGESGHTTGGLVPWEEERLTGTPTVDGAMHGQSLADRMDSLNQSLLSLEAREKNLVVFIVYIPSHPESIVEACTAFQQLFELYKKALADKRLAPPNKLVLQLLPVDFLTAVSGMPTALPIDLIKLALETYDRCTIFGGPMPAPAILLEHTLPRNIDFRLNNTGSSSLMHENTCIHIAYAQSVDERWITAAWTDNRGSQQMTASYNLGRKGKSLSSSLNEVTHEIWETTHDLISRWKVHWRIIITKCGCMDQSEIDFWVGLAQTEQQASVSLTLMTVDTSPSLQLVPPAVKVPPTASTSFYTTPVSTPQPSTVSPDQIGTPSTPMKDGSQANASTPTGTPGGADVTEPAEGDAILVDVTDQTWGAVLSHRLSNSTVPGELSTSLISGYLVKRGGTKVEDPPVIMEVNIVHTDGNPRALEALLREMLNYFRGLGTLARARGMVDRETDVRPWHIAAAEKGVRALYLLM
Length1538
PositionKinase
OrganismVerticillium longisporum
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Glomerellales> Plectosphaerellaceae> Verticillium.
Aromaticity0.06
Grand average of hydropathy-0.339
Instability index51.26
Isoelectric point5.01
Molecular weight166813.41
Publications









Function






Annotated function

Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.



GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04127
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     456.36|     181|     497|     773|     970|       1
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  501-  594 (63.36/25.68)	............................................................................................................................................P......GPP.............................ssvaapvdgdapmvnavvmadTEGDSWEQTDTKRDRGDSTFEGDDNLfgDMGPDMFGDTDITDADFSFFDEDDDNNPLDLNMSAPDTTMT
  595-  839 (229.98/131.68)	SLPTTT..PEPvSLQADiLPPTID.DPPEETTPKteapIFTKPELRHARSTLNDE...TRGRPTSDnsKALSNK...RE..P....SPFDPATvfKKVRASLGRlnNQSLGSSPTVTARKGsvfDSI..EFDPVL.....PLaskkYEQGgrfacrwtpthsdtslslkkppttdylrrhskshrkpfrtdntnarirsiTDGLENSSLQASPDKIEELSSDADDM..SLESDVDESPDLMEEPTSPFKASTKRLNLEDDMVSHVTSLR
  840-  970 (121.57/104.00)	DVESVVEDSDP.SLALE.LPRIARfEVPEVAVAK....YFDDPEPLLSQLSLQDDDIITVAQILTE..QAISGSlclRDaqSatfnSPVAPET..RRQLASLSR..TLSLVLQQAIPAALG...DSTqcQFRDLIeasdvPL....LGPP.......................................................................................................................
 1342- 1402 (41.45/12.52)	SLTLMTVDTSP.SLQL..VPPAVK..VPPTASTS....FYTTPVSTPQPSTVSPDQIGTPSTPMKDgsQA.......................................................................................................................................................................................................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04127 with Med13 domain of Kingdom Fungi
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