Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MANNPTQSPYTSLRPPPIGSRKPKNLGEFIGRIQAERGFRNVTEASLREEVAAKTNGEAKEDDVQMSVTDDEDDEEAKDIHTVKGEIMRNIDAAHNTAMVALDFVSLLLTKHNPNQAGVTLSQALRDFAGIGTLGVSKFKDSEQAGDKRRREEKRQEAKEVSQGWTLMEIERTRKAAEKSAAMLAKEVDREEKYWSEILAVKQNGWSMCRLPAERHTLGVRFGFTEASSEFRNNSLAPLRRGDDGSVVLEQGRAGVGCQRISVTLARDGEISGRSATNSSILESAPLQERVLEARNTIFSQELWHELHREAHSLASYGVRASDSSITYEPKTGPSINISLDTLLGVAPTAQEKKPDNWYAEMTQLSLHVLLSFAHRENEVQRRRPGPPHQRRHEQHNQYHLIRPILSRAIHDVSVRQCTRLVGDLVRILRQAGIEEAAFTLNNPQFVLPNSDALTSTSSNRPTAAQALVNLLLAPSDFQLDVTLTPRARIQIRGRTWFLPLTTTQYQVHLLPPLNSTDATQNSLLTSCPPYRERDGYPDLQSLKVYLLTAIPRALADLYLPLAESLSSNPSQATSEPAEEASDPIWVKSVRGNAIQDSTRDAREVAFELDEKSNADGSERLTLKASGIWYEGSEARTKFEHFDSVPGGEGQASPTKTKIKDIIEAVVTATEAV |
Length | 673 |
Position | Head |
Organism | Verticillium longisporum |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Glomerellales> Plectosphaerellaceae> Verticillium. |
Aromaticity | 0.05 |
Grand average of hydropathy | -0.560 |
Instability index | 44.94 |
Isoelectric point | 5.98 |
Molecular weight | 74673.73 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP04118 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 55.62| 17| 38| 151| 167| 1 --------------------------------------------------------------------------- 151- 167 (31.29/19.43) REEK.RQEAKEVSQ.GWTL 190- 208 (24.33/13.65) REEKyWSEILAVKQnGWSM --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 173.58| 55| 139| 334| 392| 2 --------------------------------------------------------------------------- 334- 392 (86.12/63.33) PSiNISLDTLLgvAPTAQ.EKKPDNWYAEM..TQLSLHvLLSFAHRENEVQRR..RPGPPHQRR 475- 534 (87.46/50.70) PS.DFQLDVTL..TPRARiQIRGRTWFLPLttTQYQVH.LLPPLNSTDATQNSllTSCPPYRER --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 116.34| 37| 299| 287| 329| 3 --------------------------------------------------------------------------- 287- 329 (54.50/52.19) LQERVLEARNTIFsqelwhELHREAHSLASYGVRASDSSITYE 595- 631 (61.84/42.50) IQDSTRDAREVAF......ELDEKSNADGSERLTLKASGIWYE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 184.41| 58| 193| 14| 75| 4 --------------------------------------------------------------------------- 14- 75 (89.61/69.47) RPPpiGSRkpKNLGEFIGRIQAERGFRNVTEASLR...EEVAAKTNGEAKEDDVQMSVTDDEDDE 210- 270 (94.80/60.27) RLP..AER..HTLGVRFGFTEASSEFRNNSLAPLRrgdDGSVVLEQGRAGVGCQRISVTLARDGE --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) RKPKNLGEFIGRIQAE 2) YTSLRPPPIG | 21 10 | 36 19 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab