<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04111

Description Uncharacterized protein (Fragment)
SequenceFATLFLGSFHRLDNFNALNCIPLLHPSTASLNCISQQYLHDKHHSFQSQAPSHLTQRTMDDPTRYHGTLVSLEGPVDVLATQLRLLPTSPQIFILPQVQTYLEDGDPSERFDARSFVRRMHNAIAARNEIAYSFLKDSTPDNKRLVFMNGSTPGAQAICIKTIAEHETDGDIAHAELLFNDIVKHGAAGLEDDWFSRQRQDRHHIPAEDPIVRAMRAAEALDRLTADLQPNTDVDLTFKARPRSMSLPIYSFDDRFGDAAPFYVFGVISSEDDEYIDDSTRNAFLPATPRLAVTDFGESLADTMATFEAVDNSLLPLRSPSCVGETYEHQTISPGRQVTTDMLSPRSGHSIESTDAVVYGEAFLMQMQMANPRRSTKRTKSLDRAYQTGDSYWNPPLQAQIQAGVDSGKALSVDGRRNSNVGTLLQTSLPRTIHVHCDRPTVLLSPPPPKPKKKANGAYVDKGTDAEDFRSPEHPFRPVLPFTEDLVIKIQDGADDSVLEATISAFKAGIHPIQTPEPSEQLVARKESVVKAPKLHGIETAAEDSVDPSASVLSFGPDPDEYDPFAYGPTPLKPANTTRLALTLKPVTPPTPAQTPSSLSSVCGSGEERFQSCDITGCKTAIAVQNSLRVLLNVHFPPEDQGYHHFHFSILPEMGGLWKPVFRNAGAESPRNGQRRIDQILASKQYLTMHTVDNAHITDIFGLAATPKALLSASGSSTINVHDTVDQSFPIIQSISGAHKLGCHHICTSRDGKVAASAGFGGEVKVWIVTPETGEWNLKTEITQASKAGEVWAVALSENGRFLAGTTYDGRINVWDVSGEETKRVQEYETGSPGSGSFGMCVDLSRDGKFTASGHESGAVYVFNNETGRLQHSLSGLAKPVRSVAFSPGNSRLAAAGDASVIALYDMNHGEHVGNLTGHSSWITSTDWSDTGEYLLSGAMDGKVKVWSVDRGACVATHSETDKALWSVKWLPKTQKSEMFCTAGANRSISFYREATGTSTGGARARPGPNKGQSTISFSNKVSKPVPRQELKKAAVTKGDRIVSHNKKEEEVPEAVEIEVEPEVEQPEPKVEVPEKTEAQIRAEKTTDAQINKYWRNIEAERIAKRVHVEDLSTGEKVLRYFDVSSQYGPCVGIQRMRRWERANKLGLNPPIEVLAVLLKEQKEGSQSERAHMDAILNSTAVGSKELAILRRGLKDGKSKQYLTMHTVDNAHITDIFGLAATPKALLSASGSSTINIHDTVDQSFPIIQSISGAHKLGCHHICTSRDGKVAASAGFGGEAKVWIVTPETGEWNLKTEITQATKAGEVWAVALSESGRFLAGTTYDGRINVWDVSGEETKRVQEYETGSAGSGSFGMCVDLSRDGKFTASGHESGAVYVFNNETERLQHSLSGLAKPVRSVAFSPGNSRLAAAGDASVIALYDMNHGKHVGNLTGHSSWITSTDWSDTGEYLLSGAMDGKVKVWSVDRGACVATHSETDKALWSVKWLPKTQKSEMFCTAGANRSISFYREATGT
Length1514
PositionTail
OrganismVerticillium longisporum
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Glomerellales> Plectosphaerellaceae> Verticillium.
Aromaticity0.07
Grand average of hydropathy-0.406
Instability index41.64
Isoelectric point6.04
Molecular weight164920.73
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
DNA replication	GO:0006260	IEA:InterPro
DNA synthesis involved in DNA repair	GO:0000731	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04111
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     198.62|      19|      22|     783|     801|       1
---------------------------------------------------------------------------
  783-  801 (32.98/18.88)	TQASKAGEVWAVALSENGR
  807-  824 (33.42/19.24)	TYDGRI.NVWDVSGEETKR
  831-  849 (33.11/18.99)	GSPGSGSFGMCVDLSRDGK
 1299- 1317 (32.73/18.68)	TQATKAGEVWAVALSESGR
 1323- 1340 (33.42/19.24)	TYDGRI.NVWDVSGEETKR
 1347- 1365 (32.97/18.87)	GSAGSGSFGMCVDLSRDGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.72|      16|      18|     928|     943|       2
---------------------------------------------------------------------------
  933-  952 (27.86/13.97)	EYLLSGAMDGKvkvWSvDRG
 1449- 1468 (27.86/13.97)	EYLLSGAMDGKvkvWSvDRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.65|      19|     179|     704|     723|       3
---------------------------------------------------------------------------
  704-  722 (37.77/17.88)	AATPKALLSASGSSTINVH
 1220- 1238 (37.88/17.96)	AATPKALLSASGSSTINIH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     139.05|      18|      20|     889|     906|       4
---------------------------------------------------------------------------
  889-  906 (32.73/19.15)	GNSRLAAAGDASVIALYD
  910-  927 (36.82/22.53)	GEHVGNLTGHSSWITSTD
 1405- 1422 (32.73/19.15)	GNSRLAAAGDASVIALYD
 1426- 1443 (36.76/22.48)	GKHVGNLTGHSSWITSTD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     659.73|     188|     514|     683|     998|       5
---------------------------------------------------------------------------
  683-  998 (330.04/236.60)	SKQYLTMHTVDNAHITDIFGLaatpkallsasgsstinvhDTVDQSFPIIQSISGAHKLGCHHICTSRDGKVAASAGFGGEVKVWIVTPETGEWNLKTEItqaskagevwavalsengrFLAGTtydgrinvwdvsgeetkrVQEYETgspgsgsfgmcvdlsrdgkFTASGHESGAVYVFNNETGRLQHSLSGLAKPVRSVAFSPgnsrlaaagdasvialydMNHgehvgnltghsswitstdWSDTGeyllsgamdgkVKVwsvdrgACVATHSETDKALWSVKWLPKTQKSEMFCTAGANRSISFYREATGT
 1199- 1514 (329.69/236.33)	SKQYLTMHTVDNAHITDIFGLaatpkallsasgsstinihDTVDQSFPIIQSISGAHKLGCHHICTSRDGKVAASAGFGGEAKVWIVTPETGEWNLKTEItqatkagevwavalsesgrFLAGTtydgrinvwdvsgeetkrVQEYETgsagsgsfgmcvdlsrdgkFTASGHESGAVYVFNNETERLQHSLSGLAKPVRSVAFSPgnsrlaaagdasvialydMNHgkhvgnltghsswitstdWSDTGeyllsgamdgkVKVwsvdrgACVATHSETDKALWSVKWLPKTQKSEMFCTAGANRSISFYREATGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.34|      10|      16|     249|     258|       6
---------------------------------------------------------------------------
  249-  258 (20.00/11.90)	IYSFDDRFGD
  268-  277 (18.35/10.29)	ISSEDDEYID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.10|      15|      16|     152|     166|       7
---------------------------------------------------------------------------
  152-  166 (27.48/16.86)	TPG..AQA.ICIKTIAEH
  168-  185 (17.62/ 8.23)	TDGdiAHAeLLFNDIVKH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     197.02|      47|     558|     512|     569|       8
---------------------------------------------------------------------------
   47-   91 (68.89/39.48)	.QSQAPS.HLTQR..TMDDPTRYHGTLVSLEGPVDVLATQL.RLLPTSPQ
  102-  141 (54.69/28.28)	LEDGDPSERFDAR..SFVR..RMHN.AIAARNEI..AYSFLkDSTPD...
  513-  561 (73.44/72.06)	IQTPEPSEQLVARkeSVVKAPKLHGIETAAEDSVDPSASVL.SFGPDPDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.87|      11|      16|    1075|    1085|      11
---------------------------------------------------------------------------
 1075- 1085 (17.31/11.28)	EKTEAQIRAEK
 1092- 1102 (20.56/14.83)	NKYWRNIEAER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.44|      16|      18|    1006|    1023|      14
---------------------------------------------------------------------------
 1006- 1021 (29.74/19.80)	RPGPN.........KGQSTISFSNK
 1024- 1048 (21.70/ 6.50)	KPVPRqelkkaavtKGDRIVSHNKK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04111 with Med16 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FYREATGTSTGGARARPGPNKGQSTISFSNKVSK
2) HCDRPTVLLSPPPPKPKKKANGAYVDKGTDAEDFRSPEHPF
3) KAAVTKGDRIVSHNKKEEEVPEAVEIEVEPEVEQPEPKVEVPEKTEAQIRAEKT
991
436
1033
1024
476
1086










Molecular Recognition Features






MoRF SequenceStartStop




NANANA