<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04102
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MIHILDTEHPWEVHSVSSGHSEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSQVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVAAADGSSASPVKFYKVCVSVVSEKCRIDTEILPSLFMRCTTDPNRKDRFPAITHLKFLARDMSEQVLLCASSQTSSLVECWSLRKEGLPVNNIFQQISPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFQDGSVHMVHRLSLQTMAVFYSSAPRSLDEPALKRPRTTGPAVHFKAMQLSWTSLALVGIDNHGKLSMLRISPSLGHALEPKLALQHLLFLLEYCMVTGYDWWDILLHVQPGMVQSLVERLHEEYTRQKPALQQVLSTRILAMKASLCKLSPCTMARVCDYHTKLFLMAITSTLKSLLRPHFLNTPDKSPGDRLAEICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLVSLPNQGAEHSSGLPDSASHGPVLKSHVSPDFTKGSALRPGHSFLRDGASLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPASEPDEGLVDECCLLPSQLLVPSLDWLPASDGLVSRLQPKQPLRLRFGRAPTLPSSTSILQLDGLTRAPGQPKIDHLRRLHLGAYPTEECKACTRCGCVTMLKSPNKTTAVKQWEQRWIKNCLCGGLWRRVPLSCS |
Length | 808 |
Position | Tail |
Organism | Rattus norvegicus (Rat) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia>
Eutheria> Euarchontoglires> Glires> Rodentia> Myomorpha> Muroidea> Muridae>
Murinae> Rattus.
|
Aromaticity | 0.06 |
Grand average of hydropathy | 0.017 |
Instability index | 49.05 |
Isoelectric point | 8.39 |
Molecular weight | 88975.39 |
Publications | PubMed=15057822
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 ISO:RGD
|
GO - Biological Function | thyroid hormone receptor binding GO:0046966 ISO:RGD
transcription coactivator activity GO:0003713 ISO:RGD
|
GO - Biological Process | positive regulation of transcription initiation from RNA polymerase II promoter GO:0060261 ISO:RGD
positive regulation of transcription, DNA-templated GO:0045893 ISO:RGD
|
Interaction
Repeat regions
Repeats |
>MDP04102
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 103.86| 31| 36| 688| 723| 1
---------------------------------------------------------------------------
688- 723 (54.16/36.70) PSQLLVPSLDWLPASDGlvsrlQPK.QPL.RLRFGRAP
726- 758 (49.69/24.88) PSSTSILQLDGLTRAPG.....QPKiDHLrRLHLGAYP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 97.79| 31| 36| 60| 95| 2
---------------------------------------------------------------------------
17- 50 (49.04/23.20) SSGHSEAITCLEWDQSGSRL.LSADADGQIkcwSM
64- 95 (48.75/23.57) SQVEGDPIVALSWLHNGVKLaLHVEKSGAS...SF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 83.16| 24| 36| 107| 130| 3
---------------------------------------------------------------------------
107- 130 (42.17/25.46) SLTLFGGKPMEGWIAVTVSGLVTV
145- 168 (40.99/24.56) SLCRLRGRVALADIAFTGGGNIVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 200.65| 54| 96| 354| 408| 4
---------------------------------------------------------------------------
354- 408 (89.00/57.44) DEPALKRPRTTgPAVHFKA..MQ..LSWTSLALV.GIDNHGKLSMLRISPSLGHALEPKL
410- 442 (26.68/10.44) .....................LQhlLFLLEYCMVtGYDWWDIL..LHVQPGMVQSL....
453- 507 (84.97/50.23) QKPALQQVLST.RILAMKAslCK..LSPCTMARV..CDYHTKLFLMAITSTLKSLLRPHF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 84.76| 28| 31| 602| 632| 6
---------------------------------------------------------------------------
602- 632 (41.67/32.16) KGSALrPGHSFLRDGA.SLGMLRELMVviRIW
636- 664 (43.09/23.15) KPSCL.PVYTATSDTQdSMSLLFRLLT..KLW
---------------------------------------------------------------------------
|