Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MASNPAQSFVLRPVPQSDRRPKNLGEFIARVNADRGFRNVTEESLRKEMEAEAEANGILESKEVDMVNGEGADDDGDGGGNNADDDEGADQVGIEDLHQAIGDVRLHAETAHQNAMLALDFVSLLITKENPRPAQDTVSPALRDLVGIGSLGADKLAASNVTPQRLLDHKLVATGWKFTDIDRTVNSVLTSASRLQKEISIETKYWAEVLAVSEKGWAVTRVPNEPETLGVRYGFSEAAPGFRSTSLAPMRRGDDGTVDLDCGKMLGESQRLLVTFERNHRIVGRSSLPRPFPQDAPLEERVLEARNTIFAQELWHEMNREGRLLQAYGVRLENDALSYTLHDGIRIVFSLQPLDQAVEEGASETLPEDYRAESLSSALHQLLTYAHRINNQRRSRPDSKNRDQSTTMSPYPLLRPVLANLQHETSVDDATRFISDLSTILHSAGISTVNFKLFEPPISLDLASTNGSASEALIQALFGPLELQYELNITPESRLLIHCKTAMGNVIATTYHVSLLPPAQGGTNPLLKAYHPVHLQGEGYTLPDLKYYLQQAVARVLVDRASTIVLTARAPSPSDEDELPIVWAKHISGVALENSNDSREQLRFEIILSELGHPELHLFGSWVVDQPKPATRTWTWTVGDVKQGLKKESIEQVLRNVVARVAQPLP |
Length | 666 |
Position | Head |
Organism | Diaporthe ampelina |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Diaporthales> Diaporthaceae> Diaporthe. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.374 |
Instability index | 42.88 |
Isoelectric point | 5.20 |
Molecular weight | 73532.74 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP04077 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 125.33| 39| 106| 131| 172| 1 --------------------------------------------------------------------------- 131- 172 (61.76/54.31) PRPAQDTVSPALRDLVGIGSLGADKLAAsnvTPQRLL.....DHKLV 240- 283 (63.56/46.92) PGFRSTSLAPMRRGDDGTVDLDCGKMLG...ESQRLLvtferNHRIV --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 310.36| 109| 401| 4| 125| 2 --------------------------------------------------------------------------- 4- 71 (89.24/50.38) .................................................NPAQSFVL...............................................................................................................................................................................RPVPQSDRRPkNLGEFIARVNADRGFRNVTEESLRKEMEAEA...EANGI.LESKEVDMVNGEG 72- 114 (35.72/31.13) ADDDG..DGGGNNADDDEGADQVGiEDLHQAIGDV.RLHAETAHQN.......................................................................................................................................................................................................................................................... 290- 344 (55.11/24.82) .........................................................amlaldfvsllitkenprpaqdtvspalrdlvgigslgadklaasnvtpqrlldhklvatgwkftdidrtvnsvltsasrlqkeisietkywaevlavsekgwavtrvpnepetlgvrygfseaapgfrstslapmrrgddgtvdldcgkmlgesqrllvtfernhrivgrsslpRPFPQDA..P..LEE...RVLEARN..TIFAQELWHEMNREGrllQAYGVrLENDALSYTLHDG 353- 450 (130.28/75.77) PLDQAveEGASETLPEDYRAESLS.SALHQLLTYAhRINNQRRSRPdskNRDQSTTM...............................................................................................................................................................................SPYPL..LRP.VLANLQHETSVDDATRFISDLS...............TI.LHSAGISTVN... --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) PKNLGEFIARV 2) SFVLRPVP | 21 8 | 31 15 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab