<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04062

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSFHPQTPQSPSQFSPATSSDPSLGSSGSVAAAGPGTTTLPTPAHSVNGSSSHPDSIMLDDSPHKRKRPLEDVGDDRDLKKAHIVDDYKLAIEDLHRDVGLKYLLLKSPHPESLPSTSEDLYDMFDLANLAAEVAREKPNGEKNALRKTYKGHIKRLGVTGHFDVQKKKEDSPSDFLAMLQVPDHEWNVHMVKGRSLMDGLSELTQSSLGRALTMAKGPVAKSVWDTSVLGDIGPSNGDSSKAPSAKPTAPNTPLISMPGAAINRHKSQLSSGSNAARPQRSIKKRSYGDSSYEGYGEGFPDDDTGLETGYSTGEGEGGQKRRKKASENPNSDAAGHF
Length338
PositionHead
OrganismTrichoderma harzianum (Hypocrea lixii)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Hypocreaceae> Trichoderma.
Aromaticity0.05
Grand average of hydropathy-0.789
Instability index53.01
Isoelectric point6.50
Molecular weight36180.65
Publications
PubMed=26067977

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP04062
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.86|      19|      19|      27|      45|       1
---------------------------------------------------------------------------
   16-   34 (28.67/11.50)	PATSSDPSLGSSGSVAAAG
   35-   53 (33.19/14.31)	PGTTTLPTPAHSVNGSSSH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.07|      14|      19|     259|     273|       2
---------------------------------------------------------------------------
  259-  272 (23.75/14.44)	PGAAINRHKSQLSS
  279-  292 (24.32/ 9.57)	PQRSIKKRSYGDSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.90|      14|      20|      67|      80|       3
---------------------------------------------------------------------------
   67-   80 (24.92/12.39)	KRPLEDVGDDRDLK
   89-  102 (22.98/10.98)	KLAIEDLHRDVGLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.81|      23|      23|     172|     194|       5
---------------------------------------------------------------------------
  172-  194 (43.27/32.80)	SPSDFLAMLQVPDHEWNVHMVKG
  196-  218 (37.54/27.41)	SLMDGLSELTQSSLGRALTMAKG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04062 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DTSVLGDIGPSNGDSSKAPSAKPTAPNTPLISMPGAAINRHKSQLSSGSNAARPQRSIKKRSYGDSSYEGYGEGFPDDDTGLETGYSTGEGEGGQKRRKKASENPNSDAAGHF
2) MSFHPQTPQSPSQFSPATSSDPSLGSSGSVAAAGPGTTTLPTPAHSVNGSSSHPDSIMLDDSPHKRKRPLEDVGDDRD
226
1
338
78










Molecular Recognition Features






MoRF SequenceStartStop




1) EGGQKRRKKASEN
2) SYEGYGEGFPD
317
292
329
302