<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04025

Description Mediator of RNA polymerase II transcription subunit 6
SequenceMASQAAPMEEIIWRSPQHVQMMGGYLHSNNILFYFAESTFFDPQSNNGILATQATYNESLRHVVETRATFEGKLKQMQGLEFIVSFDPLEAAAQSNPNRFDFEPNNIWVIRKQDRKKRSGMEDEVTVISTYFVVGDTIYMAPSVASVVGNRILTAVTSLSRLLKTASTLPTFTPSTGHTYLPPPARTTEPGQQASQQSKESTPMPDATQSSAAETQSSGKASLGVSTTGSSYQDTRNLAEAFHLFTQYGEEFMDEHPLTGEPGSFILSRVGENDRAAGAAVKATSKATLGTGMNTPSGVRGRSSTPQVRIDTPGKVSEMSSSPPSSGENKGKKKKNRVAS
Length340
PositionHead
OrganismPenicillium brasilianum
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Penicillium.
Aromaticity0.07
Grand average of hydropathy-0.516
Instability index51.65
Isoelectric point7.04
Molecular weight36832.67
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. 


ECO:0000256	PIRNR:PIRNR013286

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04025
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.51|      14|      16|     293|     306|       1
---------------------------------------------------------------------------
  293-  306 (26.74/18.37)	MNTPSGVRGRSSTP
  310-  323 (25.77/17.43)	IDTPGKVSEMSSSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.12|      14|      17|     208|     221|       2
---------------------------------------------------------------------------
  208-  221 (22.33/11.93)	TQSSAAETQSSGKA
  228-  241 (21.79/11.48)	TGSSYQDTRNLAEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.73|      19|      70|     172|     191|       5
---------------------------------------------------------------------------
  172-  191 (32.97/23.44)	FTpSTGHTYLPPPARTTEPG
  245-  263 (37.77/21.76)	FT.QYGEEFMDEHPLTGEPG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04025 with Med6 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GEEFMDEHPLTGEPGSFILSRVGENDRAAGAAVKATSKATLGTGMNTPSGVRGRSSTPQVRIDTPGKVSEMSSSPPSSGENKGKKKKNRVAS
2) TPSTGHTYLPPPARTTEPGQQASQQSKESTPMPDATQSSAAETQSSGKASLGVSTTGSSYQDTR
249
173
340
236










Molecular Recognition Features






MoRF SequenceStartStop




1) SGENKGKKKKNRVAS
326
340