<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04005

Description Uncharacterized protein
SequenceMTSYQPSLLRGSGSGGRGSMPSASQRSRHDETQLPEAYQQERPSWRPPLHPAAADRDVPDLFPTKPNQPEDDMSQISVRKGFAARAYVRNESFSAYEMIFTRLASPDALNTLSSWMDEVMLRRLELDRASVAPSQYKAPSRVTLNEAKLANYVKDLADPAVPLTRLSKSVPHGFRGEKLFEMLWAGGALPSAATANITTNNYLTHRIPNASTAPTPSASAPASTATTGRKSVDISRAVWFIRALGAAELSSLRNKSAATIVPEITSNLCTWMAKQVAELSLVQAAESSSTAAASPAPVSPSTQMPRTPGAGPASLSRSIAAVHFARTPSNLNPASSPSPAPTKEVCSVLQSEVDEERWIAKWSYSLSLARHLHAQNLLDRSILVRWIVDAFAASNLVQLPFMVELVQEVLVFILRRRCFVRPFLAALLIQIPTLDARLDPAAGGSLRTKLVLLFRIVCENSPDALISPRLWLEHSATLLQLLNENNSDTELLMSITNSNQVADFVEQALRPRVDRLLLHSHSGDPSHSDNAEAQPALSSILQQHLDIQALDSFDMTTIDRVFLQRAHGTHRHAKHDRDDAVWAPRIDTILTWACTDRRSGVARQYLAATLIEKIRFGVSWEESSEETDQVSLPAFDLEHHSKKTRKINVEPMLIKWLGDVESALSHNLNETTLEARTCLLAAIDVAAIVVLVGELARRGVFFYTKYLQRLIARGITTASSTGITQQRVGGDAAASAPSSSAPASRGFLHLRLLRSLPLYDQPASVYLQRRQAIYGDRTKETYEDAAQRRALRQLQSFLPFAFAEQGQPPPDMPMPPSQGDSHDLEQDLSQLWSASRFVRSKIFRSELLPAVTARVEVLNSEQFSQVSAVLVMADDFEGLAQLLATLLLRPLSDSLARAAFNMVIEYSLIWRSMDIMGTLNQLVRQQLNHSSSIRNDRQAVMASTTLLRLRTLIEGIPSRISAPPLDPHAEYDAVQQHVQALRPNVDALLQRFAKLIGSTAGSTNDSRTPTPAEGSDMLTPFRSLFMQPDATSDEIIERTIVESVLARSDASLVPAAVRLIDQLYLEASLEIDERHARWLSHLVPSIEHGTHSDTSIKVLFNLLTRLVAHGTLNLQLAMDTFLLPYLLSSVRRLTDPATRGTEASLHLGAAVSSLGEIFASSVGERVPATCYEDMRAFGAQAVLLFAQVNLLSLLRAVTCLICASDESSIVDAADKAQIDKFWKALLRSHPMRIAFRQDPRLCMLTIKDTCKSMWGCNPSRIIDLALACLDPTSLLLRDVTSIDAASVKARLDGWDTAVVANELVEIFERLQLVESSFQSRADSKTKALASGIFDDLFVRLPDIGAQLMRDCQSSGLISRFTDIGIKILSDKVKASADADAETAKKAKQLDARKEDASVNGHANARTEGQSDSREAASSNDTDTAVASSDSAKSPREQEVESTMRSVLRMCEQQATFIFNATDADSCGQLLSHVVTSLEDALNPADSNARDDATRLSTLLHRGLTFQLLHLVMRFGCLWNGSIKSVVLRLVKALLELTRQAGERAECGAQFSLLLDSLSFVLDELPPQLLSTCLPELETQLQAMELATQERTNKLQQLSFQLDNATMVSGWFVASSAGAALKRGWYMPGGLNPWECAEYLDAPPAGGVASGSGAAAAGAGGNAVRAGPVQARATGANVRTGVGAGVQTTTGASSDSQTSTLPGARTGWTSKLSLNTAIPLSMLGLRVTRDLVPQYASPASPSAASVASNDACSQPTTSTPSNAISTTTAATASTEQEDPVSSLPIFVESERSYGQRMAGEPAFSRDLRRGLLLQPVLPPQRVDGSLDDVDANGGGVMRSGNVGLSSDAIPVIDLTSSGGDNE
Length1861
PositionKinase
OrganismSporisorium scitamineum
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Sporisorium.
Aromaticity0.06
Grand average of hydropathy-0.141
Instability index49.58
Isoelectric point5.89
Molecular weight201936.44
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04005
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.83|      25|      37|     410|     434|       1
---------------------------------------------------------------------------
  383-  402 (34.29/19.46)	LV.....RWIVDAFAASNLVQLPFM
  410-  434 (44.80/27.80)	LVFILRRRCFVRPFLAALLIQIPTL
  450-  470 (34.74/19.82)	LVLLFRIVCENSP..DALI..SPRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.46|      15|      44|     513|     527|       2
---------------------------------------------------------------------------
  513-  527 (27.51/20.36)	VDRLLLHSHSGDPSH
  558-  572 (27.94/20.82)	IDRVFLQRAHGTHRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     193.61|      49|     184|    1620|    1668|       3
---------------------------------------------------------------------------
  706-  737 (27.44/10.34)	..................YLQRLIARGIttASSTGITQQRVGGDAAASAP.
 1620- 1668 (91.24/52.78)	LKRGWYMPGGLNPWECAEYLDAPPAGGV..ASGSGAAAAGAGGNAVRAGPV
 1806- 1850 (74.94/41.94)	LRRGLLLQPVLPPQRVDGSLDDVD......ANGGGVMRSGNVGLSSDAIPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     195.44|      63|     467|     577|     694|       4
---------------------------------------------------------------------------
  211-  277 (95.27/46.95)	STAPTPSASAPA.STATTGRKSVDISRAVWFIRALGAAElSSLRNKSAATivpEITSNLCTWMAKQVA
  623-  686 (100.17/33.76)	SSEETDQVSLPAfDLEHHSKKTRKINVEPMLIKWLGDVE.SALSHNLNET...TLEARTCLLAAIDVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.86|      37|     471|     577|     617|       5
---------------------------------------------------------------------------
  577-  617 (55.49/44.67)	RDDAVWAP...R.IDTILTWAC..TDRRSgvARqYLaATLIEKIRFG
 1047- 1089 (53.37/29.05)	RSDASLVPaavRlIDQLYLEASleIDERH..AR.WL.SHLVPSIEHG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.42|      15|      17|    1336|    1350|       6
---------------------------------------------------------------------------
 1336- 1350 (27.04/17.76)	LFVRLPDIGAQLMRD
 1356- 1370 (25.38/16.17)	LISRFTDIGIKILSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.67|      35|     471|     475|     511|       7
---------------------------------------------------------------------------
  475-  511 (51.32/36.54)	SATLLQL..LNE....NNSDTElLMSITNSNQVADFVeQALRP
  943-  983 (52.35/29.00)	STTLLRLrtLIEgipsRISAPP.LDPHAEYDAVQQHV.QALRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.76|      25|      29|     284|     312|       8
---------------------------------------------------------------------------
  284-  312 (38.30/27.33)	AAESSSTA....AASPAPVSPSTqmprTPGAGP
  313-  341 (38.46/17.94)	ASLSRSIAavhfARTPSNLNPAS....SPSPAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.05|      22|      29|    1221|    1248|       9
---------------------------------------------------------------------------
 1221- 1248 (30.57/32.86)	FWkAllrSHPMRI...AFR.QDPrlCMLTIKD
 1253- 1278 (32.48/16.31)	MW.G...CNPSRIidlALAcLDP..TSLLLRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.95|      15|      17|    1396|    1412|      10
---------------------------------------------------------------------------
 1396- 1412 (21.91/18.27)	ASVNGHANArtEGQSDS
 1416- 1430 (25.05/13.76)	ASSNDTDTA..VASSDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.98|      15|      29|    1136|    1151|      11
---------------------------------------------------------------------------
 1136- 1151 (22.56/19.83)	PATrGTEASLHLGA.AV
 1167- 1182 (25.42/16.41)	PAT.CYEDMRAFGAqAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.04|      15|      16|    1706|    1720|      12
---------------------------------------------------------------------------
 1706- 1720 (26.90/16.82)	GW..TSKLSLNTAIPLS
 1723- 1739 (22.13/12.29)	GLrvTRDLVPQYASPAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.00|      27|     467|     986|    1025|      13
---------------------------------------------------------------------------
  988- 1014 (46.80/37.26)	LLQRFAK..LIGSTAGSTNDSRTPTPAEG
 1303- 1331 (39.20/ 9.05)	LVEIFERlqLVESSFQSRADSKTKALASG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.35|      12|      15|     861|     872|      16
---------------------------------------------------------------------------
  861-  872 (19.47/11.89)	EQFSQVSAVLVM
  877-  888 (17.88/10.24)	EGLAQLLATLLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04005 with Med12 domain of Kingdom Fungi
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